CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23469	Canola	plastid	49.36	67.05
CDX69409	Canola	plastid	86.38	31.72
CDX85480	Canola	plastid	79.15	30.0
CDY38078	Canola	plastid	77.02	29.05
AT5G16930.1	Thale cress	plastid	76.17	27.8
CDY49920	Canola	plastid	68.09	25.04
CDX96098	Canola	mitochondrion	25.11	24.79
VIT_16s0039g02110.t01	Wine grape	plasma membrane	61.7	22.98
Solyc03g097020.2.1	Tomato	nucleus	60.85	22.63
CDY28733	Canola	plastid	60.43	22.61
KRH29004	Soybean	nucleus	57.02	21.61
KRH24032	Soybean	mitochondrion, nucleus	56.17	21.39
CDY43155	Canola	plastid	46.81	18.97
GSMUA_Achr4P17050_001	Banana	vacuole	48.09	18.49
Os02t0697600-01	Rice	mitochondrion	46.38	17.03
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	43.4	16.04
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	43.4	16.04
EES07415	Sorghum	plastid	43.4	15.72
CDY36475	Canola	plastid	42.13	15.71
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	37.87	15.4
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	41.28	15.28
Zm00001d017707_P003	Maize	plastid	41.28	15.06
Zm00001d051535_P001	Maize	plastid	41.28	14.83
CDY30315	Canola	plastid	39.57	14.05
CDY64607	Canola	plastid	34.89	13.74
CDX69234	Canola	cytosol, plastid	34.04	13.38
TraesCS6B01G294300.1	Wheat	peroxisome	28.94	12.73
CDY51218	Canola	plastid	38.72	12.69
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	22.55	10.39
CDY71527	Canola	mitochondrion	10.64	9.51
CDX68521	Canola	mitochondrion	3.4	5.52
CDX94544	Canola	mitochondrion	12.34	4.76
CDY29229	Canola	mitochondrion	6.38	4.09
CDX83073	Canola	endoplasmic reticulum	5.11	3.16
PGSC0003DMT400008177	Potato	cytosol	0.85	1.89
CDY16679	Canola	mitochondrion	0.85	1.03
CDX68520	Canola	cytosol	0.43	0.65
CDY16678	Canola	cytosol	0.0	0.0
CDY16967	Canola	cytosol	0.0	0.0
CDY23468	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY16968	EnsemblPlantsGene:GSBRNA2T00094901001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:DUF3523
ncoils:Coil	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	PFAM:PF12037	ProteinID:CDY16968	ProteinID:CDY16968.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EF009D	UniProt:A0A078FX68	MapMan:35.2	:

Description

BnaC09g40950DBnaC09g40950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX68]

Coordinates

chrLK032068:-:630108..631292

Molecular Weight (calculated)

26216.6 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.915

Length

235 amino acids

Sequence
(BLAST)

001: MAQKCAIGLM SALAAAASLS KSNIASADGP LNFSTSTPQQ QQGSTPPLPG SAKDSSVSGE ESDAPPRIRN DNPRTTSAGF DPEALERGAK ALKGINNSAH
101: AKKVFESIKT QEETRQAEFT AKAQEFKSLQ SQAEAERQRV IYDEQKKLAQ HQAQTKAQMA RYEDELARKR MQACDSTNTL FIYLTYILSY TTRNQELVKM
201: QEESSIRREV ARRATEEEIQ AQRRQTEREK AEIER

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.