CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004219.1-P	Field mustard	endoplasmic reticulum, extracellular	79.41	67.99
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	25.63	53.04
CDY16968	Canola	cytosol, extracellular, plastid	24.79	25.11
CDY36475	Canola	plastid	60.92	23.02
CDX69234	Canola	cytosol, plastid	55.04	21.91
CDY64607	Canola	plastid	54.2	21.61
CDY30315	Canola	plastid	60.08	21.6
CDY51218	Canola	plastid	59.66	19.8
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	51.68	19.55
CDX69409	Canola	plastid	47.06	17.5
CDY29229	Canola	mitochondrion	26.89	17.44
CDX85480	Canola	plastid	44.54	17.1
CDY49920	Canola	plastid	45.8	17.06
CDY38078	Canola	plastid	44.54	17.01
Zm00001d051572_P001	Maize	mitochondrion	42.86	16.86
CDY28733	Canola	plastid	43.7	16.56
EES07394	Sorghum	mitochondrion	41.18	16.2
TraesCS6D01G253600.1	Wheat	mitochondrion	41.18	16.07
CDY43155	Canola	plastid	39.08	16.03
TraesCS6A01G273800.1	Wheat	mitochondrion	40.76	15.93
Zm00001d017783_P002	Maize	mitochondrion	41.18	15.83
TraesCS6B01G300900.1	Wheat	mitochondrion	40.34	15.74
Os02t0706500-01	Rice	mitochondrion	39.08	15.1
CDY23469	Canola	plastid	10.92	15.03
HORVU6Hr1G069110.2	Barley	plastid	39.08	14.51
CDY23468	Canola	cytosol	13.45	8.38
CDY16967	Canola	cytosol	13.03	8.01
CDY71527	Canola	mitochondrion	8.82	7.98
CDX68521	Canola	mitochondrion	2.94	4.83
CDX68520	Canola	cytosol	2.94	4.55
CDY16679	Canola	mitochondrion	3.36	4.1
CDX94544	Canola	mitochondrion	7.56	2.96
CDX83073	Canola	endoplasmic reticulum	4.62	2.89
CDY16678	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX96098	EnsemblPlantsGene:GSBRNA2T00102144001	GO:A0A078E9R1	InterPro:DUF3523	ncoils:Coil	PANTHER:PTHR23075
PANTHER:PTHR23075:SF3	PFAM:PF12037	ProteinID:CDX96098	ProteinID:CDX96098.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EE2C54	MapMan:35.2	:	:	:	:

Description

BnaA07g26330D

Coordinates

chrLK031892:+:1025614..1027761

Molecular Weight (calculated)

27054.2 Da

IEP (calculated)

9.781

GRAVY (calculated)

-0.887

Length

238 amino acids

Sequence
(BLAST)

001: MGHRPMRREQ LHGRRKQSRG VREDRAAGSE PSSSSSRLTL SDVGEDRAVA SEKTEQRGRS GARRPRDLSD VGEEEQQRLG LAKAQNLRYE DELARKRLQT
101: DHEAQRRHNV ELVKMQEESS IQKEQARIAT EEQIQAQQRQ TEKERAELVR ETIRVKAIAD AEGRTHEAKL TEKQNRRMLL DKINGEREKW LAAINTTFGH
201: IEGMKLLSIA LLILIMTVGG VTTLAAGVYT TLTYCCVD

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.