Factsheet for Bra004219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96098	Canola	mitochondrion	67.99	79.41
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	21.94	53.04
Bra028131.1-P	Field mustard	nucleus	45.32	43.45
Bra024472.1-P	Field mustard	plastid	42.09	28.12
Bra011692.1-P	Field mustard	plastid	41.37	19.2
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	42.45	18.76
Bra037225.1-P	Field mustard	plastid	46.04	17.73
Bra023590.1-P	Field mustard	plastid	36.69	16.09
Bra008582.1-P	Field mustard	plastid	32.01	15.27
Zm00001d051572_P001	Maize	mitochondrion	32.37	14.88
Bra032021.1-P	Field mustard	plastid	30.94	14.83
Bra021376.1-P	Field mustard	plastid	31.3	14.75
TraesCS6D01G253600.1	Wheat	mitochondrion	31.3	14.26
EES07394	Sorghum	mitochondrion	30.94	14.21
TraesCS6A01G273800.1	Wheat	mitochondrion	30.94	14.12
HORVU6Hr1G069110.2	Barley	plastid	32.37	14.04
TraesCS6B01G300900.1	Wheat	mitochondrion	30.58	13.93
Zm00001d017783_P002	Maize	mitochondrion	30.58	13.73
Os02t0706500-01	Rice	mitochondrion	29.86	13.47
Bra029941.1-P	Field mustard	cytosol	2.88	3.9
Bra029485.1-P	Field mustard	mitochondrion	6.83	3.25

Protein Annotations

EnsemblPlants:Bra004219.1	EnsemblPlants:Bra004219.1-P	EnsemblPlantsGene:Bra004219	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:DUF3523	ncoils:Coil	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	PFAM:PF12037	SEG:seg
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025415E9	UniProt:M4CJ35	MapMan:35.2	:

Description

AT2G18330 (E=6e-057) | AAA-type ATPase family protein

Coordinates

chrA07:-:17490495..17492727

Molecular Weight (calculated)

30995.5 Da

IEP (calculated)

10.366

GRAVY (calculated)

-0.791

Length

278 amino acids

Sequence
(BLAST)

001: MNGLGIRSLL LCLLLLCLLL SLLTFAQTWA ARTPTLANGT PSNATGAAAS RGSSSDRKGS AALSLRIFIN SPSFSSSRLT SDGRRKQSRG VREDRAAGSE
101: PSSSSSRLTL SDVGEDRAVA SEKTEQRGRS GARRPRDLSD VGEEEQQRLG LAKAQNLRYE DELARKRLQT DHEAQRRHNV ELVKMQEESS IQKEQARIAT
201: EEQIQAQQRQ TEKERAELVR ETIRVKAIAD AEGRTHEAKL TEKQNRRMLL DKINGEREKW LAAINTTFGH IEGESRLY

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.