Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66030.1 | GSMUA_Achr10P... | AT2G24765.1 | 16236155 |
| AT5G66030.1 | GSMUA_Achr11P... | AT2G24765.1 | 16236155 |
| AT5G66030.1 | GSMUA_Achr10P... | AT2G24765.1 | 16830178 |
| AT5G66030.1 | GSMUA_Achr11P... | AT2G24765.1 | 16830178 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28897 | Soybean | cytosol | 44.92 | 24.09 |
| VIT_04s0210g00200.t01 | Wine grape | cytosol | 49.15 | 21.8 |
| Solyc02g082840.2.1 | Tomato | nucleus | 46.61 | 20.78 |
| KRH76555 | Soybean | cytosol | 46.05 | 20.55 |
| AT5G66030.1 | Thale cress | nucleus | 45.48 | 20.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 3.95 | 9.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.85 | 3.33 |
| KRH28898 | Soybean | cytosol | 0.85 | 2.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 1.69 | 1.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP02300_001 | EnsemblPlants:GSMUA_AchrUn_randomT02300_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG02300_001 | ncoils:Coil | PANTHER:PTHR23160 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002955493 | UniProt:M0U5P2 | MapMan:22.6.7.1 | : | : |
Description
Protein GRIP [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02300_001]
Coordinates
chrchrUn_random:-:11083847..11093260
Molecular Weight (calculated)
40747.8 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.468
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKANCFVL LAILIILLIL CVRWHITCVF AFLTFSSLCK IKVLLAEKDS KIAELDAAST GEAVRLGAAL EEMRGELNHL RDQQDREKQN WEAACQSLRT
101: KLEASENTCL RSEIELAKMR SQLELESSTK YQMLSAKDAE LIVAKDEIMR LENEFSAYKV RAHALLQKKD AELAEAKNSE LLKSLEQAVK EAEAEVAITL
201: AEREKAVKAL EVALKEHDKE IASRDTALSD AEGQIRSITM KLESTTARYM SEKDMWQKNL ESIEESWTLK YGTLEAQKVE HSGDQMQKEL DDLKQRYEKL
301: KEEHDIFRDI ADRTIEEKEK DMAKLIEDNK NLRHLLESKQ HVYIFLSSFF YYNQ
101: KLEASENTCL RSEIELAKMR SQLELESSTK YQMLSAKDAE LIVAKDEIMR LENEFSAYKV RAHALLQKKD AELAEAKNSE LLKSLEQAVK EAEAEVAITL
201: AEREKAVKAL EVALKEHDKE IASRDTALSD AEGQIRSITM KLESTTARYM SEKDMWQKNL ESIEESWTLK YGTLEAQKVE HSGDQMQKEL DDLKQRYEKL
301: KEEHDIFRDI ADRTIEEKEK DMAKLIEDNK NLRHLLESKQ HVYIFLSSFF YYNQ
001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS
Arabidopsis Description
GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.