Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66030.1 | GSMUA_Achr10P... | AT2G24765.1 | 16236155 |
| AT5G66030.1 | GSMUA_Achr11P... | AT2G24765.1 | 16236155 |
| AT5G66030.1 | GSMUA_Achr10P... | AT2G24765.1 | 16830178 |
| AT5G66030.1 | GSMUA_Achr11P... | AT2G24765.1 | 16830178 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28897 | Soybean | cytosol | 31.81 | 16.82 |
| VIT_04s0210g00200.t01 | Wine grape | cytosol | 33.52 | 14.66 |
| Solyc02g082840.2.1 | Tomato | nucleus | 32.66 | 14.36 |
| KRH76555 | Soybean | cytosol | 32.38 | 14.25 |
| AT5G66030.1 | Thale cress | nucleus | 32.09 | 14.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 1.72 | 4.14 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi, vacuole | 1.72 | 1.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 0.29 | 1.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
| KRH28898 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP02320_001 | EnsemblPlants:GSMUA_AchrUn_randomT02320_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG02320_001 | ncoils:Coil | PANTHER:PTHR23160 | SEG:seg |
| UniParc:UPI0002956797 | UniProt:M0U5P4 | MapMan:22.6.7.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02320_001]
Coordinates
chrchrUn_random:-:11109923..11117023
Molecular Weight (calculated)
40077.2 Da
IEP (calculated)
5.421
GRAVY (calculated)
-0.935
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVFGTHKV DLKKKKSIDG QSKIRTLRLI FLERPNPNKE KLVSVQASVG RRETKGKRSR RLLHSFSKLF YFRSLSGWAN FIDMDTGENE STLSQEEIID
101: GTVQQSLKEK DSANPLEQPV EVADRINSCD ASINMENGIH QNLANDEEST DELTQLVIEL SFQNEYLKSE IGDLKLELCN PKPLSDEERK SGPHVGSLEQ
201: DSSLHEQIKC LQKEIQAQKE TQMAAEDALE HLRMAYSEAD GKVQELTTKL IEAQQKMEQE IKERDDKYVE LDSKFGRLHK RARQRIQELQ KEKDDLEARF
301: SETNMKIEQA SSQQAALAQQ ELERSRQQAN EALRLMDVER QQLRTANSK
101: GTVQQSLKEK DSANPLEQPV EVADRINSCD ASINMENGIH QNLANDEEST DELTQLVIEL SFQNEYLKSE IGDLKLELCN PKPLSDEERK SGPHVGSLEQ
201: DSSLHEQIKC LQKEIQAQKE TQMAAEDALE HLRMAYSEAD GKVQELTTKL IEAQQKMEQE IKERDDKYVE LDSKFGRLHK RARQRIQELQ KEKDDLEARF
301: SETNMKIEQA SSQQAALAQQ ELERSRQQAN EALRLMDVER QQLRTANSK
001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQV
Arabidopsis Description
GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.