CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02913
KRH18982

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66030.1	KRH02913	AT2G24765.1	16236155
AT5G66030.1	KRH18982	AT2G24765.1	16236155
AT5G66030.1	KRH02913	AT2G24765.1	16830178
AT5G66030.1	KRH18982	AT2G24765.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28897	Soybean	cytosol	79.32	95.3
KRH28898	Soybean	cytosol	15.64	94.66
HORVU2Hr1G059110.2	Barley	cytosol	11.85	71.21
VIT_04s0210g00200.t01	Wine grape	cytosol	68.98	68.55
Solyc02g082840.2.1	Tomato	nucleus	64.31	64.23
AT5G66030.1	Thale cress	nucleus	62.04	62.44
GSMUA_AchrUn_...	Banana	nucleus	7.57	60.0
KXG36201	Sorghum	cytosol	51.83	53.1
Os07t0472500-01	Rice	nucleus	52.71	52.58
HORVU2Hr1G059170.7	Barley	mitochondrion	51.83	50.68
TraesCS2D01G238300.1	Wheat	mitochondrion	51.7	50.55
TraesCS2B01G259500.1	Wheat	mitochondrion	51.58	50.43
TraesCS2A01G234700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	51.45	50.31
Zm00001d006357_P001	Maize	cytosol	48.17	49.16
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, vacuole	20.55	46.05
GSMUA_AchrUn_...	Banana	cytosol	7.31	40.0
GSMUA_AchrUn_...	Banana	nucleus	14.25	32.38

Protein Annotations

EntrezGene:100795939	MapMan:22.6.7.1	EMBL:ACUP02000622	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G159900	GO:GO:0000003
GO:GO:0000795	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	InterPro:GRIP_dom	UniProt:I1J8D8	InterPro:IPR000237	EnsemblPlants:KRH76555	ProteinID:KRH76555
ProteinID:KRH76555.1	PFAM:PF01465	PFscan:PS50913	PANTHER:PTHR23160	PANTHER:PTHR23160:SF10	SMART:SM00755
UniParc:UPI00029621E7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:49843469..49853042

Molecular Weight (calculated)

90573.0 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.862

Length

793 amino acids

Sequence
(BLAST)

001: MMDTHAEDSA RSEENFPDVT HHNEDGSNGN LILENGLSDG NQGPADTHDQ LLQMVMDLRF QNDFLKSQFE GFKNVDSVHS DSNIQKGVGG LEDGESDIVK
101: ELKDKIQLLN KEFLEEKQTR IASEEALKHL QTAYSEAEAK AQELSEKLAE AQTKLDQEVK EREEKYLELD SKFNRLHKRA KQRIQEVQKE KDDLEARFSE
201: VNEIAERASS QQSALQQELE RTRKQANEAL KAMDVDRQQL RSANNNLRDT IEDLRRSLQP KESAIEALQQ SVVEKEQMLE DMRGLLQAAE EKRQAALAEL
301: SAKHQKNIQS LEAQLNDALS DRSKATESIS SLQVLVAEKE SRIAEMEAAS TGEAARLRAA VESVKGELSH LKEEHEKERE SWETASQALK AKLEIAESNC
401: IRAEVEVAKI RSQLESEVST QTRILNMRDA ELLAAKEEIS SLEKEFSSYK VRAHALLQKK DAELAAAKDS EQLKALEETL REVENEVLSI TEERDRVLQD
501: LQSAMANHEK EIAERDTALE NVKQQIRSFE IKLDSANVKH LKEKEEWGLS LQNVEETWRI RCEAMKAENE ATATKDMQKE LEEFKQRCKK LKEEHASFHD
601: LADRMIEEKD YEISRLIDEN KNLRQSLQSR PPVDQNDNYT TAMHKLDSTN LSPSAAEQQI LILARQQAQR EEELALSQRH ILALQEEIEE LERENRLHSQ
701: QEAMLKDELR SMERSKKREG VDMTYLKNVI LKLLETGEVE VLLPVIGMLL QFSPEEIQKC QQAYHNSTDV PPPNPASDTS GSGLSLFSRF TFS

Best Arabidopsis Sequence Match ( AT5G66030.1 )
(BLAST)

001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS

Arabidopsis Description

GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.