CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02913
KRH18982

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66030.1	KRH02913	AT2G24765.1	16236155
AT5G66030.1	KRH18982	AT2G24765.1	16236155
AT5G66030.1	KRH02913	AT2G24765.1	16830178
AT5G66030.1	KRH18982	AT2G24765.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G059110.2	Barley	cytosol	63.36	62.88
GSMUA_AchrUn_...	Banana	cytosol	31.3	28.28
KRH76555	Soybean	cytosol	94.66	15.64
VIT_04s0210g00200.t01	Wine grape	cytosol	87.79	14.41
AT5G66030.1	Thale cress	nucleus	82.44	13.71
Solyc02g082840.2.1	Tomato	nucleus	81.68	13.48
KXG36201	Sorghum	cytosol	71.76	12.14
Os07t0472500-01	Rice	nucleus	72.52	11.95
HORVU2Hr1G059170.7	Barley	mitochondrion	71.76	11.59
TraesCS2A01G234700.2	Wheat	cytosol, mitochondrion, nucleus, plastid	70.99	11.47
TraesCS2B01G259500.1	Wheat	mitochondrion	70.99	11.47
TraesCS2D01G238300.1	Wheat	mitochondrion	70.99	11.47
Zm00001d006357_P001	Maize	cytosol	54.96	9.27
GSMUA_AchrUn_...	Banana	nucleus	1.53	2.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi, vacuole	2.29	0.85
GSMUA_AchrUn_...	Banana	nucleus	0.0	0.0
KRH28897	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02006770	EnsemblPlants:KRH28898	EnsemblPlantsGene:GLYMA_11G0842001	GO:GO:0000042	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006810	GO:GO:0008150	InterPro:GRIP_dom	InterPro:IPR000237	ncoils:Coil
PANTHER:PTHR23157	PANTHER:PTHR23157:SF25	PFAM:PF01465	PFscan:PS50913	ProteinID:KRH28898	ProteinID:KRH28898.1
SEG:seg	SMART:SM00755	UniParc:UPI0006EDACDC	UniProt:A0A0R0HKB6	MapMan:22.6.7.1	:

Description

hypothetical protein

Coordinates

chr11:+:6335902..6337749

Molecular Weight (calculated)

15083.0 Da

IEP (calculated)

4.724

GRAVY (calculated)

-0.614

Length

131 amino acids

Sequence
(BLAST)

001: ILARQQAQRE EELAQSQRHI LALQEEIEEL ERENRLHSQQ EAMLKDELRN MERSKKREGV DMTYLKNVIL KLLETGEVEV LLPVIGMLLQ FSPEEIQKCQ
101: QAYHNSTDVP PNPASDTSGS GLSLFSRFTF S

Best Arabidopsis Sequence Match ( AT5G66030.1 )
(BLAST)

001: MSEDKESDVV GEEEESHVIK EDKELNDASN ETLTENGDQL LQMIAELRLE NDFLRSQFEG LKDEVAQGRS LQKAEQVEAD SAQLKQLQEQ VASLSREIDV
101: EKQTRVAAEQ ALEHLREAYS EADAKSQEYS SKFSQVEQKL DQEIKERDEK YADLDAKFTR LHKRAKQRIQ EIQKEKDDLD ARFREVNETA ERASSQHSSM
201: QQELERTRQQ ANEALKAMDA ERQQLRSANN KLRDTIEELR GSLQPKENKI ETLQQSLLDK DQILEDLKKQ LQAVEERKQI AVTELSAKHQ KNLEGLEAQV
301: VDALSERDKA AETISSLQVL LAEKESKIAE MEAAATGEAA RLRAAAETLK GELAHLKSEN EKEKETWEAS CDALKSKLEI AESNYLQAEI EVAKMRSQLG
401: SEMSMQTQIL STKDAELKGA REEINRLQSE FSSYKIRAHA LLQKKDMELA AAKDSEQIKS LEEALKEAEK EVYLVSAERD RAQQDLQSAL ASLEKELEER
501: AGALKDASEQ IKSLEVKLDS TVARNQAEKQ AWEEDLRVLE ETWRRRCEAL TAQNEASPAE GIEKELENAK LRNKRMKEEH ESVRELADRL IEEKDREISR
601: LVDEMTNLRK SMESKPVWNK SPSQVHHYGN NNTESQQQDV SNLSTSAAEH QILILARQQA QREEELAQTQ RHILALQEEI EELERENRLH SQQEAVLKTE
701: LREMERKQKR EGVDMTYLKN VILKLLETGE VEALLPVVGM LLQFSPEEIQ KCQQAYHSST TAATTTEATP SPASEGSGLS VFSRFSFS

Arabidopsis Description

GRIPProtein GRIP [Source:UniProtKB/Swiss-Prot;Acc:Q8S2T0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.