CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28897
KRH28898
KRH76555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24765.1	KRH28897	AT5G66030.1	16236155
AT2G24765.1	KRH28898	AT5G66030.1	16236155
AT2G24765.1	KRH76555	AT5G66030.1	16236155
AT2G24765.1	KRH28897	AT5G66030.1	16830178
AT2G24765.1	KRH28898	AT5G66030.1	16830178
AT2G24765.1	KRH76555	AT5G66030.1	16830178

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02913	Soybean	cytosol	90.12	93.37
Solyc07g006640.2.1	Tomato	plastid	96.51	91.21
Bra011295.1-P	Field mustard	cytosol	93.6	88.46
CDX68781	Canola	cytosol	93.6	88.46
CDX75192	Canola	cytosol	93.6	88.46
EES14799	Sorghum	cytosol, mitochondrion	93.02	87.91
Os08t0248900-01	Rice	nucleus, plasma membrane	93.02	87.91
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	93.02	87.91
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.02	87.91
CDY45596	Canola	cytosol	92.44	87.36
CDY34756	Canola	cytosol	92.44	87.36
CDX76793	Canola	cytosol	92.44	87.36
Bra032062.1-P	Field mustard	cytosol	92.44	87.36
Bra007833.1-P	Field mustard	cytosol	92.44	87.36
HORVU7Hr1G061220.1	Barley	cytosol, mitochondrion	91.86	86.81
AT2G24765.1	Thale cress	cytosol	91.86	86.81
CDY36172	Canola	cytosol	88.95	84.07
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	91.86	79.8
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	91.86	79.8
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	91.28	79.29
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	94.77	73.42
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	93.6	63.39
KRH56584	Soybean	mitochondrion	63.95	60.77
KRG90489	Soybean	mitochondrion	63.95	60.77
KRG93262	Soybean	nucleus	63.95	60.77
KRG96566	Soybean	mitochondrion	63.95	60.77
KRG99354	Soybean	mitochondrion	63.95	60.77
KRH69574	Soybean	endoplasmic reticulum, nucleus	63.95	60.77
KRH45651	Soybean	mitochondrion	63.95	60.77
KRH33780	Soybean	mitochondrion, peroxisome	63.37	60.22
KRH31758	Soybean	mitochondrion	63.95	59.78
KRH36902	Soybean	endoplasmic reticulum	62.21	58.15
KRH74584	Soybean	nucleus	63.95	57.89
KRH77051	Soybean	mitochondrion	58.14	54.95
KRH27742	Soybean	cytosol	58.14	51.81
KRH77702	Soybean	cytosol	51.74	50.57
KRH69176	Soybean	endoplasmic reticulum	63.95	49.33
KRH29023	Soybean	cytosol	55.81	49.23
KRH24049	Soybean	cytosol	55.23	48.72
KRH34351	Soybean	endoplasmic reticulum	50.58	47.54
KRG92441	Soybean	endoplasmic reticulum	50.58	47.54
KRG92448	Soybean	endoplasmic reticulum	50.58	47.54
KRH07000	Soybean	extracellular, golgi	31.4	44.63
KRH34356	Soybean	cytosol, extracellular	36.05	44.6
KRH76824	Soybean	cytosol	46.51	43.24
KRH28677	Soybean	cytosol	46.51	43.24
KRH20906	Soybean	endoplasmic reticulum	38.95	32.84
KRH11380	Soybean	endoplasmic reticulum	38.95	32.84

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EMBL:ACUP02008154	EnsemblPlantsGene:GLYMA_13G094000	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	UniProt:I1LVU0	InterPro:IPR024156
EnsemblPlants:KRH18982	ProteinID:KRH18982	ProteinID:KRH18982.1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF41	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00023D11AF	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:20924486..20929593

Molecular Weight (calculated)

19359.4 Da

IEP (calculated)

4.830

GRAVY (calculated)

0.067

Length

172 amino acids

Sequence
(BLAST)

001: MGLVFTKLFS SLFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAIIY VVDSSDVDRL
101: VIAKEEFHAI LEEEELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKN RQWAIFKTSA IKGEGLFEGL DW

Best Arabidopsis Sequence Match ( AT2G24765.1 )
(BLAST)

001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG

Arabidopsis Description

ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.