CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41444	Canola	mitochondrion	94.57	96.13
CDY47137	Canola	peroxisome	94.57	96.13
Bra016344.1-P	Field mustard	mitochondrion	94.57	96.13
CDX91717	Canola	mitochondrion	94.57	96.13
CDY44152	Canola	mitochondrion, peroxisome	94.02	95.58
CDY25787	Canola	mitochondrion, peroxisome	94.02	95.58
CDY11588	Canola	mitochondrion, peroxisome	94.02	95.58
CDY09441	Canola	mitochondrion, peroxisome	94.02	95.58
CDY04706	Canola	mitochondrion, peroxisome	94.02	95.58
CDY03747	Canola	mitochondrion, peroxisome	94.02	95.58
CDY54291	Canola	mitochondrion, peroxisome	94.02	95.58
AT2G47170.2	Thale cress	mitochondrion	94.02	95.58
AT1G70490.4	Thale cress	mitochondrion, peroxisome	94.02	95.58
AT1G23490.1	Thale cress	mitochondrion, peroxisome	94.02	95.58
KRG96566	Soybean	mitochondrion	93.48	95.03
KRG93262	Soybean	nucleus	93.48	95.03
KRG90489	Soybean	mitochondrion	93.48	95.03
AT1G10630.2	Thale cress	mitochondrion	93.48	95.03
KRH56584	Soybean	mitochondrion	93.48	95.03
Bra024604.1-P	Field mustard	mitochondrion	93.48	95.03
KRH69574	Soybean	endoplasmic reticulum, nucleus	92.93	94.48
KRG99354	Soybean	mitochondrion	92.93	94.48
KRH45651	Soybean	mitochondrion	92.93	94.48
PGSC0003DMT400003226	Potato	mitochondrion	92.93	94.48
KRH33780	Soybean	mitochondrion, peroxisome	92.93	94.48
TraesCS2A01G235500.1	Wheat	golgi, plastid	92.93	94.48
EER96075	Sorghum	mitochondrion	92.39	93.92
Os07t0223100-01	Rice	plasma membrane	92.39	93.92
Os07t0223400-01	Rice	mitochondrion	92.39	93.92
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	92.39	93.92
GSMUA_Achr2P11590_001	Banana	mitochondrion	92.39	93.92
KRH31758	Soybean	mitochondrion	93.48	93.48
VIT_14s0066g01080.t01	Wine grape	mitochondrion	91.85	93.37
Os03t0811900-01	Rice	plasma membrane	91.85	93.37
EER93218	Sorghum	mitochondrion	91.3	92.82
GSMUA_Achr7P18350_001	Banana	cytosol	82.61	91.57
Bra012376.1-P	Field mustard	cytosol	93.48	91.49
GSMUA_Achr10P...	Banana	cytosol	82.07	90.96
Zm00001d005231_P006	Maize	cytosol	91.85	90.86
Bra003954.1-P	Field mustard	cytosol	88.04	89.5
KRH74584	Soybean	nucleus	92.39	89.47
CDX68343	Canola	cytosol	88.04	89.01
Zm00001d023657_P001	Maize	cytosol	22.28	87.23
Zm00001d019191_P007	Maize	peroxisome	92.39	85.43
GSMUA_Achr11P...	Banana	cytosol	92.39	85.0
Zm00001d013007_P001	Maize	plastid	91.3	82.76
KRH77051	Soybean	mitochondrion	80.98	81.87
TraesCS5D01G480200.1	Wheat	unclear	91.3	79.62
TraesCS5B01G479100.1	Wheat	golgi	91.3	79.62
TraesCS5A01G467400.1	Wheat	cytosol	91.3	79.62
KRH69176	Soybean	endoplasmic reticulum	93.48	77.13
CDY23500	Canola	cytosol	86.96	74.77
HORVU5Hr1G111500.2	Barley	mitochondrion	91.3	71.79
GSMUA_Achr3P18390_001	Banana	plasma membrane	91.85	69.83
Zm00001d012537_P003	Maize	cytosol	73.91	67.0
KRH07000	Soybean	extracellular, golgi	42.39	64.46
KRH18982	Soybean	endoplasmic reticulum	58.15	62.21
KRH02913	Soybean	cytosol	53.26	59.04
KRH77702	Soybean	cytosol	54.35	56.82
KRH27742	Soybean	cytosol	58.15	55.44
KRH29023	Soybean	cytosol	58.7	55.38
KRH24049	Soybean	cytosol	58.7	55.38
KRG92448	Soybean	endoplasmic reticulum	52.72	53.01
KRG92441	Soybean	endoplasmic reticulum	52.72	53.01
KRH34351	Soybean	endoplasmic reticulum	52.72	53.01
GSMUA_Achr6P08570_001	Banana	cytosol	92.39	52.96
KRH34356	Soybean	cytosol, extracellular	37.5	49.64
KRH76824	Soybean	cytosol	46.74	46.49
KRH28677	Soybean	cytosol	46.74	46.49
KRH11380	Soybean	endoplasmic reticulum	37.5	33.82
KRH20906	Soybean	endoplasmic reticulum	37.5	33.82

Protein Annotations

EntrezGene:100789436	MapMan:22.3.2.1	Gene3D:3.40.50.300	EMBL:ACUP02005400	EnsemblPlantsGene:GLYMA_09G030900	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	UniProt:I1L0L6
InterPro:IPR024156	EnsemblPlants:KRH36902	ProteinID:KRH36902	ProteinID:KRH36902.1	ProteinID:KRH36903.1	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI0002338154	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:2544729..2547616

Molecular Weight (calculated)

20821.1 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.249

Length

184 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS KLCAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: GEAKDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DRLGLNSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNISGK ASFK

Best Arabidopsis Sequence Match ( AT1G70490.5 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A

Arabidopsis Description

ARF2-AADP-ribosylation factor 2-B [Source:UniProtKB/Swiss-Prot;Acc:P0DH91]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.