Factsheet for TraesCS5B01G479100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0811900-01	Rice	plasma membrane	84.83	98.89
GSMUA_Achr2P11590_001	Banana	mitochondrion	84.36	98.34
TraesCS5D01G480200.1	Wheat	unclear	98.1	98.1
TraesCS5A01G467400.1	Wheat	cytosol	98.1	98.1
Zm00001d023657_P001	Maize	cytosol	21.8	97.87
TraesCS3B01G368600.1	Wheat	mitochondrion	83.89	97.79
Os07t0223400-01	Rice	mitochondrion	83.89	97.79
Os07t0223100-01	Rice	plasma membrane	83.89	97.79
KRG93262	Soybean	nucleus	83.41	97.24
TraesCS2A01G235500.1	Wheat	golgi, plastid	83.41	97.24
KRH56584	Soybean	mitochondrion	83.41	97.24
CDX91717	Canola	mitochondrion	82.94	96.69
AT1G23490.1	Thale cress	mitochondrion, peroxisome	82.94	96.69
VIT_14s0066g01080.t01	Wine grape	mitochondrion	82.94	96.69
AT1G70490.4	Thale cress	mitochondrion, peroxisome	82.94	96.69
AT2G47170.2	Thale cress	mitochondrion	82.94	96.69
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	82.94	96.69
PGSC0003DMT400003226	Potato	mitochondrion	82.94	96.69
Bra016344.1-P	Field mustard	mitochondrion	82.94	96.69
AT1G10630.2	Thale cress	mitochondrion	82.94	96.69
CDY54291	Canola	mitochondrion, peroxisome	82.94	96.69
CDY44152	Canola	mitochondrion, peroxisome	82.94	96.69
CDY03747	Canola	mitochondrion, peroxisome	82.94	96.69
CDY04706	Canola	mitochondrion, peroxisome	82.94	96.69
CDY09441	Canola	mitochondrion, peroxisome	82.94	96.69
CDY11588	Canola	mitochondrion, peroxisome	82.94	96.69
CDY25787	Canola	mitochondrion, peroxisome	82.94	96.69
CDY41444	Canola	mitochondrion	82.94	96.69
TraesCS1B01G317000.1	Wheat	mitochondrion	83.89	96.2
Bra024604.1-P	Field mustard	mitochondrion	82.46	96.13
CDY47137	Canola	peroxisome	82.46	96.13
Zm00001d005231_P006	Maize	cytosol	83.89	95.16
Bra016215.1-P	Field mustard	cytosol	81.52	95.03
GSMUA_Achr7P18350_001	Banana	cytosol	74.41	94.58
GSMUA_Achr10P...	Banana	cytosol	73.93	93.98
AT5G14670.1	Thale cress	mitochondrion	83.41	93.62
TraesCS5B01G140900.1	Wheat	cytosol	80.09	93.37
Bra012376.1-P	Field mustard	cytosol	82.94	93.09
Zm00001d013007_P001	Maize	plastid	88.15	91.63
KRH36902	Soybean	endoplasmic reticulum	79.62	91.3
Zm00001d019191_P007	Maize	peroxisome	85.31	90.45
CDX68343	Canola	cytosol	77.25	89.56
Bra003954.1-P	Field mustard	cytosol	76.78	89.5
CDX75849	Canola	cytosol	48.34	88.7
GSMUA_Achr11P...	Banana	cytosol	82.94	87.5
HORVU5Hr1G111500.2	Barley	mitochondrion	85.31	76.92
CDY23500	Canola	cytosol	76.78	75.7
GSMUA_Achr3P18390_001	Banana	plasma membrane	84.36	73.55
Zm00001d012537_P003	Maize	cytosol	67.77	70.44
OQU86657	Sorghum	peroxisome, plastid	87.2	59.93
TraesCS1B01G212500.1	Wheat	cytosol	51.66	57.07
GSMUA_Achr6P08570_001	Banana	cytosol	86.26	56.7
TraesCS7B01G181400.1	Wheat	cytosol, mitochondrion	51.66	55.05
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	45.5	52.17
TraesCS6B01G114900.2	Wheat	mitochondrion	46.45	50.52
TraesCS1B01G453100.1	Wheat	cytosol	27.49	49.15
TraesCS5B01G013100.1	Wheat	cytosol	40.76	46.49
TraesCS6B01G295200.1	Wheat	plastid	45.97	39.43
TraesCS1B01G087700.1	Wheat	peroxisome	30.33	31.68
TraesCS2B01G191100.2	Wheat	cytosol, plastid	24.17	23.83

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS5B01G479100	EnsemblPlants:TraesCS5B01G479100.1	TIGR:cd04150	:	:	:

Description

No Description!

Coordinates

chr5B:+:650546112..650548502

Molecular Weight (calculated)

24020.8 Da

IEP (calculated)

7.665

GRAVY (calculated)

-0.356

Length

211 amino acids

Sequence
(BLAST)

001: MGFRLTRGDR DSVLQERPAG RKSTYAGGEE MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG
101: QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TTGEGLYEGL
201: DWLSSNIANK S

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.