Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G234700.2 | |
| TraesCS2B01G259500.1 | |
| TraesCS2D01G238300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G282400.1 | Wheat | cytosol, mitochondrion | 99.49 | 99.49 |
| HORVU7Hr1G061220.1 | Barley | cytosol, mitochondrion | 91.41 | 99.45 |
| TraesCS7A01G284000.3 | Wheat | cytosol, mitochondrion | 98.99 | 98.99 |
| Os08t0248900-01 | Rice | nucleus, plasma membrane | 89.9 | 97.8 |
| EES14799 | Sorghum | cytosol, mitochondrion | 89.9 | 97.8 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 85.86 | 93.41 |
| Solyc07g006640.2.1 | Tomato | plastid | 85.35 | 92.86 |
| KRH02913 | Soybean | cytosol | 77.78 | 92.77 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 84.85 | 92.31 |
| KRH18982 | Soybean | endoplasmic reticulum | 79.8 | 91.86 |
| VIT_04s0008g07360.t01 | Wine grape | cytosol, mitochondrion | 82.83 | 90.61 |
| AT2G24765.1 | Thale cress | cytosol | 82.83 | 90.11 |
| CDX76793 | Canola | cytosol | 82.32 | 89.56 |
| CDY34756 | Canola | cytosol | 82.32 | 89.56 |
| CDY45596 | Canola | cytosol | 82.32 | 89.56 |
| CDX75192 | Canola | cytosol | 82.32 | 89.56 |
| CDX68781 | Canola | cytosol | 82.32 | 89.56 |
| Bra032062.1-P | Field mustard | cytosol | 82.32 | 89.56 |
| Bra011295.1-P | Field mustard | cytosol | 82.32 | 89.56 |
| Bra007833.1-P | Field mustard | cytosol | 82.32 | 89.56 |
| CDY36172 | Canola | cytosol | 79.8 | 86.81 |
| VIT_11s0052g01720.t01 | Wine grape | cytosol, mitochondrion | 81.31 | 72.52 |
| PGSC0003DMT400070636 | Potato | cytosol, mitochondrion | 78.79 | 61.42 |
| TraesCS3B01G368600.1 | Wheat | mitochondrion | 55.05 | 60.22 |
| TraesCS1B01G317000.1 | Wheat | mitochondrion | 55.05 | 59.24 |
| TraesCS5B01G140900.1 | Wheat | cytosol | 54.04 | 59.12 |
| TraesCS5B01G479100.1 | Wheat | golgi | 55.05 | 51.66 |
| TraesCS1B01G212500.1 | Wheat | cytosol | 48.99 | 50.79 |
| TraesCS6B01G114900.2 | Wheat | mitochondrion | 46.97 | 47.94 |
| TraesCS4B01G164400.1 | Wheat | endoplasmic reticulum | 42.42 | 45.65 |
| TraesCS1B01G453100.1 | Wheat | cytosol | 25.25 | 42.37 |
| TraesCS5B01G013100.1 | Wheat | cytosol | 37.88 | 40.54 |
| TraesCS6B01G295200.1 | Wheat | plastid | 42.93 | 34.55 |
| TraesCS1B01G087700.1 | Wheat | peroxisome | 31.82 | 31.19 |
| TraesCS2B01G191100.2 | Wheat | cytosol, plastid | 27.27 | 25.23 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005795 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0046686 | InterPro:IPR024156 | InterPro:P-loop_NTPase |
| PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF41 | SMART:SM00177 |
| SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 |
| EnsemblPlantsGene:TraesCS7B01G181400 | EnsemblPlants:TraesCS7B01G181400.1 | TIGR:cd04151 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:274309324..274318959
Molecular Weight (calculated)
22290.9 Da
IEP (calculated)
6.537
GRAVY (calculated)
-0.017
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVFTRLFS SVFGNREARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRYILYS KYPYPKSVIM MPYWRCYFPN
101: TQAIIYVVDS SDTDRLVTAK EEFHSILEED ELKGAVVLVY ANKQDLPGAL DDAAITESLE LHKIKSRQWA IFKTSAIKGE GLFEGLNWLS NALKSGGS
101: TQAIIYVVDS SDTDRLVTAK EEFHSILEED ELKGAVVLVY ANKQDLPGAL DDAAITESLE LHKIKSRQWA IFKTSAIKGE GLFEGLNWLS NALKSGGS
001: MGILFTRMFS SVFGNKEARI LVLGLDNAGK TTILYRLQMG EVVSTIPTIG FNVETVQYNN IKFQVWDLGG QTSIRPYWRC YFPNTQAVIY VVDSSDTDRI
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG
101: GVAKEEFHAI LEEDELKGAV VLIFANKQDL PGALDDAAVT EALELHKIKS RQWAIFKTCA VKGEGLFEGL DWLSNTLKSG SG
Arabidopsis Description
ARF3ADP-ribosylation factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P40940]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.