Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G152600.1 | Wheat | cytosol | 97.83 | 97.83 |
TraesCS4A01G149200.1 | Wheat | cytosol | 97.28 | 97.28 |
HORVU4Hr1G038090.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 96.2 | 96.2 |
Os11t0586900-02 | Rice | cytosol | 95.11 | 95.11 |
EES08754 | Sorghum | cytosol, mitochondrion | 94.02 | 94.02 |
Zm00001d052978_P001 | Maize | extracellular | 92.93 | 92.93 |
GSMUA_Achr4P01270_001 | Banana | endoplasmic reticulum | 84.78 | 85.25 |
GSMUA_Achr1P04710_001 | Banana | endoplasmic reticulum, extracellular | 84.24 | 84.7 |
AT3G22950.1 | Thale cress | cytosol | 83.15 | 83.61 |
VIT_05s0020g04460.t01 | Wine grape | cytosol | 53.8 | 82.5 |
Bra039725.1-P | Field mustard | cytosol | 81.52 | 81.97 |
CDY53727 | Canola | cytosol | 81.52 | 81.97 |
KRG92448 | Soybean | endoplasmic reticulum | 80.98 | 81.42 |
Solyc03g005300.2.1 | Tomato | cytosol | 80.43 | 80.87 |
CDY36874 | Canola | cytosol | 80.43 | 80.87 |
Bra036878.1-P | Field mustard | cytosol | 80.43 | 80.87 |
CDY16265 | Canola | cytosol | 80.43 | 80.87 |
CDY29751 | Canola | cytosol | 80.43 | 80.87 |
KRG92441 | Soybean | endoplasmic reticulum | 80.43 | 80.87 |
KRH34351 | Soybean | endoplasmic reticulum | 80.43 | 80.87 |
PGSC0003DMT400034971 | Potato | cytosol | 79.89 | 80.33 |
KRH34356 | Soybean | cytosol, extracellular | 57.61 | 76.26 |
TraesCS5B01G140900.1 | Wheat | cytosol | 52.72 | 53.59 |
TraesCS3B01G368600.1 | Wheat | mitochondrion | 52.17 | 53.04 |
TraesCS1B01G317000.1 | Wheat | mitochondrion | 51.63 | 51.63 |
TraesCS5B01G479100.1 | Wheat | golgi | 52.17 | 45.5 |
TraesCS6B01G114900.2 | Wheat | mitochondrion | 47.83 | 45.36 |
TraesCS1B01G212500.1 | Wheat | cytosol | 45.65 | 43.98 |
TraesCS7B01G181400.1 | Wheat | cytosol, mitochondrion | 45.65 | 42.42 |
TraesCS5B01G013100.1 | Wheat | cytosol | 33.7 | 33.51 |
TraesCS1B01G453100.1 | Wheat | cytosol | 20.11 | 31.36 |
TraesCS6B01G295200.1 | Wheat | plastid | 41.3 | 30.89 |
TraesCS1B01G087700.1 | Wheat | peroxisome | 32.61 | 29.7 |
TraesCS2B01G191100.2 | Wheat | cytosol, plastid | 27.72 | 23.83 |
Protein Annotations
MapMan:22.3.2.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | InterPro:IPR024156 | InterPro:P-loop_NTPase | PFAM:PF00025 |
PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF290 | SMART:SM00175 | SMART:SM00177 |
SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 |
EnsemblPlantsGene:TraesCS4B01G164400 | EnsemblPlants:TraesCS4B01G164400.1 | TIGR:cd04153 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:340991158..340998939
Molecular Weight (calculated)
20315.3 Da
IEP (calculated)
6.236
GRAVY (calculated)
0.059
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAWMSRVWF LMFPAKEYKI VVVGLDNAGK TTSLYKLHLG EAVTAAPTIG SNVEEVVFKN IRFEVWDLGG QESLRTSWAT YYSGTHAVIV VIDSTDRARI
101: NIIKDELFRL IQHADLENTV VLVFANKQDL KDAMSAAEIT DALSLHSIKN HDWHIQASCA ITGEGLYDGM GWIAQKVAGK ATAS
101: NIIKDELFRL IQHADLENTV VLVFANKQDL KDAMSAAEIT DALSLHSIKN HDWHIQASCA ITGEGLYDGM GWIAQKVAGK ATAS
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
Arabidopsis Description
ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.