Factsheet for Zm00001d052978_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08754	Sorghum	cytosol, mitochondrion	98.91	98.91
Os11t0586900-02	Rice	cytosol	95.65	95.65
TraesCS4D01G152600.1	Wheat	cytosol	92.93	92.93
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	92.93	92.93
TraesCS4A01G149200.1	Wheat	cytosol	92.39	92.39
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	91.3	91.3
VIT_05s0020g04460.t01	Wine grape	cytosol	55.43	85.0
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	83.7	84.15
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	83.7	84.15
AT3G22950.1	Thale cress	cytosol	82.61	83.06
KRG92448	Soybean	endoplasmic reticulum	82.07	82.51
KRG92441	Soybean	endoplasmic reticulum	81.52	81.97
KRH34351	Soybean	endoplasmic reticulum	81.52	81.97
Solyc03g005300.2.1	Tomato	cytosol	81.52	81.97
PGSC0003DMT400034971	Potato	cytosol	80.98	81.42
CDY53727	Canola	cytosol	80.43	80.87
Bra039725.1-P	Field mustard	cytosol	80.43	80.87
Bra036878.1-P	Field mustard	cytosol	79.35	79.78
CDY36874	Canola	cytosol	79.35	79.78
CDY29751	Canola	cytosol	79.35	79.78
CDY16265	Canola	cytosol	79.35	79.78
KRH34356	Soybean	cytosol, extracellular	58.7	77.7
Zm00001d023657_P001	Maize	cytosol	14.13	55.32
Zm00001d008295_P002	Maize	plastid	52.17	53.04
Zm00001d038533_P001	Maize	plastid	51.09	51.09
Zm00001d043113_P001	Maize	plastid	50.54	50.82
Zm00001d005231_P006	Maize	cytosol	51.09	50.54
Zm00001d019191_P007	Maize	peroxisome	51.63	47.74
Zm00001d013007_P001	Maize	plastid	51.09	46.31
Zm00001d051546_P001	Maize	cytosol	45.65	43.3
Zm00001d030157_P001	Maize	extracellular	45.11	42.78
Zm00001d044868_P001	Maize	cytosol	42.93	41.8
Zm00001d015121_P002	Maize	mitochondrion	44.02	41.75
Zm00001d017650_P002	Maize	cytosol	39.13	40.45
Zm00001d017717_P001	Maize	cytosol	46.2	38.46
Zm00001d012537_P003	Maize	cytosol	37.5	33.99
Zm00001d029408_P001	Maize	endoplasmic reticulum	32.07	29.21
Zm00001d022172_P001	Maize	golgi, peroxisome	35.33	27.66
Zm00001d033414_P001	Maize	extracellular	35.33	25.59

Protein Annotations

EntrezGene:100191770	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:AQK58481.1	UniProt:B4FA33	EMBL:BT033971
EMBL:EU967435	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	SignalP:SignalP-noTM	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI00017B6160	EnsemblPlantsGene:Zm00001d052978	EnsemblPlants:Zm00001d052978_P001	EnsemblPlants:Zm00001d052978_T001	:

Description

ADP-ribosylation factor C1

Coordinates

chr4:+:207028261..207031432

Molecular Weight (calculated)

20318.4 Da

IEP (calculated)

6.236

GRAVY (calculated)

0.061

Length

184 amino acids

Sequence
(BLAST)

001: MGAWMSRVWF LMFPAREYKL VVVGLDNAGK TTTLYKLHLG EAVTAAPTIG SNVEEVVFKN LRFEVWDLGG QESLRTSWAT YYRGTHAVIV VIDSTDRARI
101: NIIKDELFRL LQHADLEGAV VLVFANKQDL KDAMAPAEIT DALSLHSIKD HDWHIQASCA ITGDGLYDGL GWIAQKVAGK ATAS

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.