Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53727 | Canola | cytosol | 95.08 | 95.08 |
| CDY16265 | Canola | cytosol | 95.08 | 95.08 |
| Bra039725.1-P | Field mustard | cytosol | 95.08 | 95.08 |
| CDY29751 | Canola | cytosol | 94.54 | 94.54 |
| Bra036878.1-P | Field mustard | cytosol | 94.54 | 94.54 |
| CDY36874 | Canola | cytosol | 93.99 | 93.99 |
| KRG92448 | Soybean | endoplasmic reticulum | 90.16 | 90.16 |
| KRH34351 | Soybean | endoplasmic reticulum | 89.62 | 89.62 |
| Solyc03g005300.2.1 | Tomato | cytosol | 89.07 | 89.07 |
| PGSC0003DMT400034971 | Potato | cytosol | 88.52 | 88.52 |
| KRG92441 | Soybean | endoplasmic reticulum | 88.52 | 88.52 |
| VIT_05s0020g04460.t01 | Wine grape | cytosol | 57.92 | 88.33 |
| Os11t0586900-02 | Rice | cytosol | 85.79 | 85.33 |
| GSMUA_Achr4P01270_001 | Banana | endoplasmic reticulum | 84.15 | 84.15 |
| TraesCS4D01G152600.1 | Wheat | cytosol | 84.15 | 83.7 |
| EES08754 | Sorghum | cytosol, mitochondrion | 84.15 | 83.7 |
| GSMUA_Achr1P04710_001 | Banana | endoplasmic reticulum, extracellular | 83.61 | 83.61 |
| TraesCS4A01G149200.1 | Wheat | cytosol | 83.61 | 83.15 |
| TraesCS4B01G164400.1 | Wheat | endoplasmic reticulum | 83.61 | 83.15 |
| KRH34356 | Soybean | cytosol, extracellular | 62.84 | 82.73 |
| Zm00001d052978_P001 | Maize | extracellular | 83.06 | 82.61 |
| HORVU4Hr1G038090.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.06 | 82.61 |
| AT1G70490.4 | Thale cress | mitochondrion, peroxisome | 53.55 | 54.14 |
| AT1G23490.1 | Thale cress | mitochondrion, peroxisome | 53.55 | 54.14 |
| AT3G62290.1 | Thale cress | cytosol | 53.01 | 53.59 |
| AT2G47170.2 | Thale cress | mitochondrion | 53.01 | 53.59 |
| AT1G10630.2 | Thale cress | mitochondrion | 53.01 | 53.59 |
| AT5G14670.1 | Thale cress | mitochondrion | 52.46 | 51.06 |
| AT2G24765.1 | Thale cress | cytosol | 48.63 | 48.9 |
| AT3G03120.1 | Thale cress | cytosol | 46.99 | 44.79 |
| AT5G17060.2 | Thale cress | cytosol | 46.45 | 44.27 |
| AT2G15310.1 | Thale cress | mitochondrion | 45.36 | 40.49 |
| AT2G18390.1 | Thale cress | cytosol | 38.25 | 37.84 |
| AT5G52210.2 | Thale cress | cytosol | 34.43 | 30.73 |
Protein Annotations
| MapMan:22.3.2.1 | Gene3D:3.40.50.300 | EntrezGene:821868 | UniProt:A0A178VHR0 | ProteinID:AEE76695.1 | ProteinID:AEE76696.1 |
| Symbol:ARFC1 | ArrayExpress:AT3G22950 | EnsemblPlantsGene:AT3G22950 | RefSeq:AT3G22950 | TAIR:AT3G22950 | RefSeq:AT3G22950-TAIR-G |
| EnsemblPlants:AT3G22950.1 | TAIR:AT3G22950.1 | Symbol:ATARFC1 | EMBL:AY063958 | EMBL:AY086337 | EMBL:AY096401 |
| Unigene:At.27127 | ProteinID:BAB03042.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | InterPro:IPR024156 | RefSeq:NP_001189951.1 |
| RefSeq:NP_188935.1 | ProteinID:OAP05228.1 | InterPro:P-loop_NTPase | PFAM:PF00025 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF290 |
| UniProt:Q9LIK1 | SMART:SM00175 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 | UniParc:UPI00000A62D8 | : | : |
Description
ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
Coordinates
chr3:-:8136182..8138084
Molecular Weight (calculated)
20549.7 Da
IEP (calculated)
6.892
GRAVY (calculated)
-0.109
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.