Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021371.1-P | Field mustard | cytosol | 96.35 | 96.35 |
| CDY23463 | Canola | cytosol | 96.35 | 96.35 |
| CDY43149 | Canola | cytosol | 95.83 | 95.83 |
| CDY28739 | Canola | cytosol | 95.83 | 95.83 |
| Bra032015.1-P | Field mustard | cytosol | 95.83 | 95.83 |
| Solyc06g072800.2.1 | Tomato | cytosol | 65.1 | 94.7 |
| Solyc03g096910.2.1 | Tomato | cytosol | 64.58 | 93.94 |
| AT5G17060.2 | Thale cress | cytosol | 93.75 | 93.75 |
| KRH27742 | Soybean | cytosol | 91.67 | 91.19 |
| PGSC0003DMT400069538 | Potato | cytosol | 91.67 | 91.19 |
| KRH77702 | Soybean | cytosol | 83.33 | 90.91 |
| VIT_16s0039g02240.t01 | Wine grape | cytosol | 91.15 | 90.67 |
| PGSC0003DMT400001454 | Potato | cytosol | 90.62 | 90.16 |
| KRH29023 | Soybean | cytosol | 90.1 | 88.72 |
| KRH24049 | Soybean | cytosol | 89.58 | 88.21 |
| TraesCS6A01G268000.1 | Wheat | cytosol | 86.46 | 86.91 |
| TraesCS6D01G246900.1 | Wheat | cytosol | 85.94 | 86.39 |
| EES07411 | Sorghum | cytosol | 85.42 | 84.54 |
| Zm00001d051546_P001 | Maize | cytosol | 84.38 | 83.51 |
| GSMUA_AchrUn_... | Banana | cytosol | 80.21 | 82.8 |
| GSMUA_Achr7P04780_001 | Banana | cytosol | 80.73 | 82.45 |
| Os02t0699300-01 | Rice | cytosol, extracellular, plastid | 48.44 | 75.0 |
| Zm00001d017717_P001 | Maize | cytosol | 84.9 | 73.76 |
| HORVU6Hr1G067840.2 | Barley | cytosol | 86.46 | 59.5 |
| AT1G10630.2 | Thale cress | mitochondrion | 55.21 | 58.56 |
| AT3G62290.1 | Thale cress | cytosol | 55.21 | 58.56 |
| AT2G47170.2 | Thale cress | mitochondrion | 55.21 | 58.56 |
| AT1G70490.4 | Thale cress | mitochondrion, peroxisome | 55.21 | 58.56 |
| AT1G23490.1 | Thale cress | mitochondrion, peroxisome | 55.21 | 58.56 |
| TraesCS6B01G295200.1 | Wheat | plastid | 75.0 | 58.54 |
| AT2G24765.1 | Thale cress | cytosol | 53.65 | 56.59 |
| AT5G14670.1 | Thale cress | mitochondrion | 55.21 | 56.38 |
| AT2G15310.1 | Thale cress | mitochondrion | 53.12 | 49.76 |
| AT3G22950.1 | Thale cress | cytosol | 44.79 | 46.99 |
| AT2G18390.1 | Thale cress | cytosol | 39.06 | 40.54 |
| AT5G52210.2 | Thale cress | cytosol | 29.69 | 27.8 |
Protein Annotations
| MapMan:22.3.2.1 | Gene3D:3.40.50.300 | EntrezGene:821079 | UniProt:A0A178VH47 | ProteinID:AAF26112.1 | ProteinID:AEE73904.1 |
| ArrayExpress:AT3G03120 | EnsemblPlantsGene:AT3G03120 | RefSeq:AT3G03120 | TAIR:AT3G03120 | RefSeq:AT3G03120-TAIR-G | EnsemblPlants:AT3G03120.1 |
| TAIR:AT3G03120.1 | Symbol:ATARFB1C | EMBL:AY085011 | EMBL:BT004032 | EMBL:BT005084 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | InterPro:IPR024156 |
| RefSeq:NP_186962.1 | ProteinID:OAP05737.1 | InterPro:P-loop_NTPase | PFAM:PF00025 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00328 |
| PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF300 | UniProt:Q9M9N1 | SMART:SM00177 | SMART:SM00178 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 | UniParc:UPI000000C244 |
Description
ATARFB1CATARFB1C [Source:UniProtKB/TrEMBL;Acc:A0A178VH47]
Coordinates
chr3:+:717143..719449
Molecular Weight (calculated)
21744.4 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.140
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSATLKEV KAAGYSSVGP SF
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSATLKEV KAAGYSSVGP SF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.