Factsheet for PGSC0003DMT400069538

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072800.2.1	Tomato	cytosol	67.36	98.48
Solyc03g096910.2.1	Tomato	cytosol	65.8	96.21
VIT_16s0039g02240.t01	Wine grape	cytosol	94.82	94.82
PGSC0003DMT400001454	Potato	cytosol	93.26	93.26
KRH27742	Soybean	cytosol	92.23	92.23
AT3G03120.1	Thale cress	cytosol	91.19	91.67
TraesCS6A01G268000.1	Wheat	cytosol	90.67	91.62
KRH77702	Soybean	cytosol	83.42	91.48
AT5G17060.2	Thale cress	cytosol	90.67	91.15
TraesCS6D01G246900.1	Wheat	cytosol	90.16	91.1
CDY16963	Canola	cytosol	89.64	90.1
CDY23463	Canola	cytosol	89.64	90.1
CDX69406	Canola	cytosol	89.64	90.1
Bra021371.1-P	Field mustard	cytosol	89.64	90.1
CDY28739	Canola	cytosol	89.12	89.58
CDY43149	Canola	cytosol	89.12	89.58
Bra032015.1-P	Field mustard	cytosol	89.12	89.58
Bra008579.1-P	Field mustard	cytosol	89.12	89.58
KRH29023	Soybean	cytosol	89.64	88.72
EES07411	Sorghum	cytosol	89.12	88.66
KRH24049	Soybean	cytosol	89.12	88.21
Zm00001d051546_P001	Maize	cytosol	88.08	87.63
GSMUA_Achr7P04780_001	Banana	cytosol	82.38	84.57
GSMUA_AchrUn_...	Banana	cytosol	81.35	84.41
Zm00001d017717_P001	Maize	cytosol	88.6	77.38
Os02t0699300-01	Rice	cytosol, extracellular, plastid	48.19	75.0
HORVU6Hr1G067840.2	Barley	cytosol	91.19	63.08
TraesCS6B01G295200.1	Wheat	plastid	77.2	60.57
PGSC0003DMT400042276	Potato	mitochondrion	55.44	59.12
PGSC0003DMT400035158	Potato	mitochondrion	54.92	58.56
PGSC0003DMT400003226	Potato	mitochondrion	54.92	58.56
PGSC0003DMT400065739	Potato	mitochondrion	54.92	58.56
PGSC0003DMT400075807	Potato	cytosol	53.89	57.46
PGSC0003DMT400064241	Potato	cytosol	53.89	57.46
PGSC0003DMT400064240	Potato	cytosol	50.26	57.06
PGSC0003DMT400011952	Potato	golgi	52.85	56.67
PGSC0003DMT400034971	Potato	cytosol	45.6	48.09
PGSC0003DMT400043258	Potato	cytosol	21.76	42.42
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	50.26	38.19
PGSC0003DMT400043326	Potato	cytosol	29.02	23.63

Protein Annotations

EntrezGene:102582856	MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:M1CKM6	InterPro:P-loop_NTPase
PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG401027033	PGSC:PGSC0003DMG401027033	EnsemblPlants:PGSC0003DMT400069538	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000294B79F	RefSeq:XP_006347332.1	:

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG401027033]

Coordinates

chr6:+:53492664..53499605

Molecular Weight (calculated)

21671.4 Da

IEP (calculated)

8.640

GRAVY (calculated)

-0.053

Length

193 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQAI IRDPFMLNAV ILVFANKQDM KGAMTPMEVC EGLGLYDLKN RKWHIQGACA LKGDGLYEGL DWLSSTLKDL KAAGYSSVGT SAF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.