Factsheet for Solyc06g072800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096910.2.1	Tomato	cytosol	97.73	97.73
PGSC0003DMT400069538	Potato	cytosol	98.48	67.36
PGSC0003DMT400001454	Potato	cytosol	96.21	65.8
VIT_16s0039g02240.t01	Wine grape	cytosol	95.45	65.28
AT3G03120.1	Thale cress	cytosol	94.7	65.1
TraesCS6D01G246900.1	Wheat	cytosol	93.94	64.92
TraesCS6A01G268000.1	Wheat	cytosol	93.94	64.92
AT5G17060.2	Thale cress	cytosol	93.94	64.58
CDY43149	Canola	cytosol	93.94	64.58
CDY28739	Canola	cytosol	93.94	64.58
Bra032015.1-P	Field mustard	cytosol	93.94	64.58
KRH27742	Soybean	cytosol	93.94	64.25
Bra021371.1-P	Field mustard	cytosol	93.18	64.06
CDY23463	Canola	cytosol	93.18	64.06
GSMUA_AchrUn_...	Banana	cytosol	90.15	63.98
GSMUA_Achr7P04780_001	Banana	cytosol	90.91	63.83
CDY16963	Canola	cytosol	92.42	63.54
CDX69406	Canola	cytosol	92.42	63.54
EES07411	Sorghum	cytosol	93.18	63.4
Bra008579.1-P	Field mustard	cytosol	91.67	63.02
Zm00001d051546_P001	Maize	cytosol	92.42	62.89
KRH29023	Soybean	cytosol	92.42	62.56
KRH24049	Soybean	cytosol	91.67	62.05
KRH77702	Soybean	cytosol	80.3	60.23
Zm00001d017717_P001	Maize	cytosol	92.42	55.2
TraesCS6B01G295200.1	Wheat	plastid	93.94	50.41
Solyc01g100860.2.1	Tomato	unclear	62.12	45.3
Solyc05g005190.2.1	Tomato	nucleus	62.12	45.3
HORVU6Hr1G067840.2	Barley	cytosol	94.7	44.8
Solyc07g006640.2.1	Tomato	plastid	58.33	42.31
Solyc02g092970.2.1	Tomato	cytosol	60.61	41.88
Solyc01g008000.2.1	Tomato	plastid, unclear	62.88	39.71
Solyc01g100870.2.1	Tomato	plastid	62.12	39.05
Solyc03g005300.2.1	Tomato	cytosol	48.48	34.97
Solyc07g014650.2.1	Tomato	cytosol	37.88	29.59
Solyc12g099080.1.1	Tomato	unclear	39.39	23.32
Solyc04g025560.2.1	Tomato	unclear	43.18	22.53
Solyc10g074630.1.1	Tomato	cytosol	32.58	22.28

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4C900	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc06g072800.2	EnsemblPlants:Solyc06g072800.2.1	TIGRFAMs:TIGR00231
UniParc:UPI00027659BA	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44895873..44901336

Molecular Weight (calculated)

15192.5 Da

IEP (calculated)

8.893

GRAVY (calculated)

-0.054

Length

132 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQAI IRDPFMLNAV ILVFANKQDM EQ

Best Arabidopsis Sequence Match ( AT3G03120.2 )
(BLAST)

001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM VKVHRL

Arabidopsis Description

ATARFB1CATARFB1C [Source:UniProtKB/TrEMBL;Acc:A0A178VH47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.