Factsheet for VIT_16s0039g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072800.2.1	Tomato	cytosol	65.28	95.45
PGSC0003DMT400069538	Potato	cytosol	94.82	94.82
Solyc03g096910.2.1	Tomato	cytosol	64.77	94.7
PGSC0003DMT400001454	Potato	cytosol	93.26	93.26
KRH27742	Soybean	cytosol	92.75	92.75
KRH77702	Soybean	cytosol	83.94	92.05
AT3G03120.1	Thale cress	cytosol	90.67	91.15
EES07411	Sorghum	cytosol	91.19	90.72
Bra021371.1-P	Field mustard	cytosol	90.16	90.62
CDY23463	Canola	cytosol	90.16	90.62
TraesCS6A01G268000.1	Wheat	cytosol	89.64	90.58
Bra032015.1-P	Field mustard	cytosol	89.64	90.1
CDY28739	Canola	cytosol	89.64	90.1
CDY43149	Canola	cytosol	89.64	90.1
TraesCS6D01G246900.1	Wheat	cytosol	89.12	90.05
Zm00001d051546_P001	Maize	cytosol	90.16	89.69
AT5G17060.2	Thale cress	cytosol	89.12	89.58
KRH29023	Soybean	cytosol	90.16	89.23
KRH24049	Soybean	cytosol	89.64	88.72
CDY16963	Canola	cytosol	88.08	88.54
CDX69406	Canola	cytosol	88.08	88.54
Bra008579.1-P	Field mustard	cytosol	87.56	88.02
GSMUA_Achr7P04780_001	Banana	cytosol	82.9	85.11
GSMUA_AchrUn_...	Banana	cytosol	81.87	84.95
Zm00001d017717_P001	Maize	cytosol	90.67	79.19
Os02t0699300-01	Rice	cytosol, extracellular, plastid	49.74	77.42
HORVU6Hr1G067840.2	Barley	cytosol	90.16	62.37
TraesCS6B01G295200.1	Wheat	plastid	77.72	60.98
VIT_14s0066g01080.t01	Wine grape	mitochondrion	53.89	57.46
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	53.37	56.91
VIT_05s0020g00490.t01	Wine grape	cytosol	53.89	56.22
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	53.89	53.06
VIT_05s0020g04460.t01	Wine grape	cytosol	30.57	49.17
VIT_07s0129g01090.t01	Wine grape	mitochondrion	48.7	47.47
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	53.37	46.4
VIT_04s0023g01820.t01	Wine grape	cytosol	38.86	40.54
VIT_07s0005g02000.t01	Wine grape	cytosol	53.89	37.96
VIT_00s2604g00010.t01	Wine grape	extracellular	16.06	31.0
VIT_14s0060g00690.t01	Wine grape	golgi	53.89	30.23
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	30.57	28.78
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	16.06	23.66
VIT_00s0189g00080.t01	Wine grape	cytosol	17.1	22.15

Protein Annotations

EntrezGene:100254624	wikigene:100254624	MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A5B0V8	EMBL:AM442726
ProteinID:CAN63035	ProteinID:CAN63035.1	ProteinID:CBI26537	ProteinID:CBI26537.3	EMBL:FN595750	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
EntrezGene:LOC100254624	wikigene:LOC100254624	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGR:TC53610	TIGRFAMs:TIGR00231	UniParc:UPI000151FD9E	ArrayExpress:VIT_16s0039g02240
EnsemblPlantsGene:VIT_16s0039g02240	EnsemblPlants:VIT_16s0039g02240.t01	unigene:Vvi.2621	RefSeq:XP_002274926	RefSeq:XP_002274926.1	:

Description

No Description!

Coordinates

chr16:+:2343245..2364088

Molecular Weight (calculated)

21718.5 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.063

Length

193 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKAEFQAI IRDPFMLNSV ILIFANKQDM KGAMTPMEVC EGLGLYDLKN RKWHIQGTCA LKGDGLYEGL DWLAGTLKEL RAAGYSSVGT SSF

Best Arabidopsis Sequence Match ( AT3G03120.1 )
(BLAST)

001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM RGAMSPREVC EGLGLLDLKN RKWHIQGTCA LQGDGLYEGL DWLSATLKEV KAAGYSSVGP SF

Arabidopsis Description

ATARFB1CATARFB1C [Source:UniProtKB/TrEMBL;Acc:A0A178VH47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.