Factsheet for VIT_07s0005g02000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90489	Soybean	mitochondrion	66.06	100.0
KRG99354	Soybean	mitochondrion	65.69	99.45
KRH69574	Soybean	endoplasmic reticulum, nucleus	65.69	99.45
PGSC0003DMT400035158	Potato	mitochondrion	65.69	99.45
EES19719	Sorghum	mitochondrion	65.33	98.89
TraesCS3B01G368600.1	Wheat	mitochondrion	65.33	98.89
Os05t0489600-03	Rice	plasma membrane	65.33	98.89
VIT_05s0020g00490.t01	Wine grape	cytosol	66.42	98.38
Os01t0813400-01	Rice	plasma membrane	64.96	98.34
TraesCS3A01G337300.1	Wheat	mitochondrion	64.96	97.8
VIT_14s0066g01080.t01	Wine grape	mitochondrion	64.6	97.79
Zm00001d038533_P001	Maize	plastid	64.96	96.74
TraesCS1B01G317000.1	Wheat	mitochondrion	64.96	96.74
TraesCS1A01G306200.1	Wheat	mitochondrion	64.96	95.7
Bra008746.1-P	Field mustard	mitochondrion	65.33	94.71
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	65.33	91.33
HORVU1Hr1G068790.1	Barley	plastid	66.79	77.54
TraesCS3D01G330500.1	Wheat	cytosol	66.42	72.51
HORVU0Hr1G027130.1	Barley	plasma membrane	67.15	72.44
TraesCS1D01G305900.1	Wheat	golgi	67.88	70.72
VIT_07s0129g01090.t01	Wine grape	mitochondrion	50.73	70.2
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	40.15	60.77
HORVU3Hr1G079700.1	Barley	cytosol	67.15	59.16
VIT_14s0060g00690.t01	Wine grape	golgi	73.36	58.43
VIT_16s0039g02240.t01	Wine grape	cytosol	37.96	53.89
VIT_05s0020g04460.t01	Wine grape	cytosol	21.53	49.17
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	39.05	48.2
VIT_04s0023g01820.t01	Wine grape	cytosol	31.75	47.03
VIT_00s2604g00010.t01	Wine grape	extracellular	13.5	37.0
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	23.72	31.71
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	13.5	28.24
VIT_00s0189g00080.t01	Wine grape	cytosol	13.14	24.16

Protein Annotations

EntrezGene:100242458	wikigene:100242458	EntrezGene:100242677	wikigene:100242677	EntrezGene:100267487	wikigene:100267487
MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:CCB60045	ProteinID:CCB60045.1	UniProt:F6HZD0	EMBL:FN596502
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
InterPro:IPR024156	EntrezGene:LOC100242458	wikigene:LOC100242458	EntrezGene:LOC100242677	wikigene:LOC100242677	EntrezGene:LOC100267487
wikigene:LOC100267487	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000210A2B3	ArrayExpress:VIT_07s0005g02000	EnsemblPlantsGene:VIT_07s0005g02000
EnsemblPlants:VIT_07s0005g02000.t01	RefSeq:XP_002279216	RefSeq:XP_002279216.1	RefSeq:XP_002281047	RefSeq:XP_002281047.1	RefSeq:XP_003632415
RefSeq:XP_003632415.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4454902..4458027

Molecular Weight (calculated)

31068.4 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.319

Length

274 amino acids

Sequence
(BLAST)

001: MQTKTYKGHP ITLSKNPSPS STWNSEAPLP NSQVKKVING VVSTLPPIHL DLTINSQFLC HIATQQGEKE EREICSLHFP KILFVPRQPS DTKMGLSFTK
101: LFSRLFAKKE MRILMVGLDA AGKTTILYKL KLGEIVTTIP TIGFNVETVE YKNISFTVWD VGGQDKIRPL WRHYFQNTQG LIFVVDSNDR DRVVEARDEL
201: HRMLNEDELR DAVLLVFANK QDLPNAMNAA EITDKLGLHS LRQRHWYIQS TCATSGEGLY EGLDWLSNNI ANKA

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.