Factsheet for VIT_05s0020g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
peroxisome 1
endoplasmic reticulum 2
golgi 2
mitochondrion 2
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	96.76	98.89
Os05t0489600-03	Rice	plasma membrane	96.76	98.89
TraesCS3B01G368600.1	Wheat	mitochondrion	96.76	98.89
Os01t0813400-01	Rice	plasma membrane	96.22	98.34
TraesCS3A01G337300.1	Wheat	mitochondrion	96.22	97.8
VIT_14s0066g01080.t01	Wine grape	mitochondrion	95.68	97.79
Zm00001d038533_P001	Maize	plastid	96.22	96.74
TraesCS1B01G317000.1	Wheat	mitochondrion	96.22	96.74
TraesCS1A01G306200.1	Wheat	mitochondrion	96.22	95.7
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	96.76	91.33
HORVU1Hr1G068790.1	Barley	plastid	96.76	75.85
TraesCS3D01G330500.1	Wheat	cytosol	96.22	70.92
HORVU0Hr1G027130.1	Barley	plasma membrane	96.76	70.47
VIT_07s0129g01090.t01	Wine grape	mitochondrion	75.14	70.2
TraesCS1D01G305900.1	Wheat	golgi	96.76	68.06
VIT_07s0005g02000.t01	Wine grape	cytosol	98.38	66.42
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	59.46	60.77
HORVU3Hr1G079700.1	Barley	cytosol	96.76	57.56
VIT_16s0039g02240.t01	Wine grape	cytosol	56.22	53.89
VIT_14s0060g00690.t01	Wine grape	golgi	97.84	52.62
VIT_05s0020g04460.t01	Wine grape	cytosol	31.89	49.17
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	57.84	48.2
VIT_04s0023g01820.t01	Wine grape	cytosol	47.03	47.03
VIT_00s2604g00010.t01	Wine grape	extracellular	20.0	37.0
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	35.14	31.71
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	20.0	28.24
VIT_00s0189g00080.t01	Wine grape	cytosol	19.46	24.16

Protein Annotations

EntrezGene:100242458	wikigene:100242458	EntrezGene:100242677	wikigene:100242677	EntrezGene:100267487	wikigene:100267487
MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:CCB50276	ProteinID:CCB50276.1	UniProt:F6HE24	EMBL:FN595749
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0046854	GO:GO:0048015	InterPro:IPR024156	EntrezGene:LOC100242458	wikigene:LOC100242458	EntrezGene:LOC100242677
wikigene:LOC100242677	EntrezGene:LOC100267487	wikigene:LOC100267487	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGR:TC51799	TIGR:TC57240
TIGRFAMs:TIGR00231	UniParc:UPI000210845C	ArrayExpress:VIT_05s0020g00490	EnsemblPlantsGene:VIT_05s0020g00490	EnsemblPlants:VIT_05s0020g00490.t01	RefSeq:XP_002264654
RefSeq:XP_002264654.1	RefSeq:XP_002279216	RefSeq:XP_002279216.1	RefSeq:XP_002281047	RefSeq:XP_002281047.1	:

Description

No Description!

Coordinates

chr5:+:2404226..2408060

Molecular Weight (calculated)

21183.6 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.268

Length

185 amino acids

Sequence
(BLAST)

001: MDKKMGLSFT KLFSRLFAKK EMRILMVGLD AAGKTTILYK LKLGEIVTTI PTIGFNVETV EYKNISFTVW DVGGQDKIRP LWRHYFQNTQ GLIFVVDSND
101: RDRVVEARDE LHRMLNEDEL RDAVLLVFAN KQDLPNAMNA AEITDKLGLH SLRQRHWYIQ STCATSGEGL YEGLDWLSNN IANKA

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.