Factsheet for VIT_01s0127g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19719	Sorghum	mitochondrion	91.33	98.89
Os05t0489600-03	Rice	plasma membrane	91.33	98.89
TraesCS3B01G368600.1	Wheat	mitochondrion	91.33	98.89
Os01t0813400-01	Rice	plasma membrane	90.82	98.34
TraesCS3A01G337300.1	Wheat	mitochondrion	90.82	97.8
VIT_14s0066g01080.t01	Wine grape	mitochondrion	90.31	97.79
VIT_05s0020g00490.t01	Wine grape	cytosol	91.33	96.76
Zm00001d038533_P001	Maize	plastid	90.82	96.74
TraesCS1B01G317000.1	Wheat	mitochondrion	90.82	96.74
TraesCS1A01G306200.1	Wheat	mitochondrion	90.82	95.7
HORVU1Hr1G068790.1	Barley	plastid	91.33	75.85
TraesCS3D01G330500.1	Wheat	cytosol	90.82	70.92
HORVU0Hr1G027130.1	Barley	plasma membrane	91.33	70.47
VIT_07s0129g01090.t01	Wine grape	mitochondrion	70.41	69.7
TraesCS1D01G305900.1	Wheat	golgi	91.33	68.06
VIT_07s0005g02000.t01	Wine grape	cytosol	91.33	65.33
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	56.12	60.77
HORVU3Hr1G079700.1	Barley	cytosol	91.33	57.56
VIT_16s0039g02240.t01	Wine grape	cytosol	53.06	53.89
VIT_14s0060g00690.t01	Wine grape	golgi	91.33	52.03
VIT_05s0020g04460.t01	Wine grape	cytosol	30.1	49.17
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	55.1	48.65
VIT_04s0023g01820.t01	Wine grape	cytosol	43.88	46.49
VIT_00s2604g00010.t01	Wine grape	extracellular	18.88	37.0
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	33.67	32.2
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	18.88	28.24
VIT_00s0189g00080.t01	Wine grape	cytosol	18.88	24.83

Protein Annotations

EntrezGene:100243082	wikigene:100243082	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:CCB51794	ProteinID:CCB51794.1
UniProt:F6HHV7	EMBL:FN595761	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	EntrezGene:LOC100243082	wikigene:LOC100243082	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGR:TC51721	TIGRFAMs:TIGR00231	UniParc:UPI00021084B4	ArrayExpress:VIT_01s0127g00440	EnsemblPlantsGene:VIT_01s0127g00440	EnsemblPlants:VIT_01s0127g00440.t01
unigene:Vvi.12062	RefSeq:XP_002265874	RefSeq:XP_002265874.1	RefSeq:XP_002265983	RefSeq:XP_002265983.1	:

Description

No Description!

Coordinates

chr1:+:7790752..7798899

Molecular Weight (calculated)

22338.9 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.236

Length

196 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELREAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK ATVESVPVDG RSWMQG

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.