Factsheet for VIT_14s0066g01080.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56584	Soybean	mitochondrion	97.79	97.79
KRG93262	Soybean	nucleus	97.79	97.79
GSMUA_Achr2P11590_001	Banana	mitochondrion	97.79	97.79
CDY41444	Canola	mitochondrion	97.24	97.24
Os03t0811900-01	Rice	plasma membrane	97.24	97.24
AT1G10630.2	Thale cress	mitochondrion	97.24	97.24
PGSC0003DMT400003226	Potato	mitochondrion	97.24	97.24
CDY54291	Canola	mitochondrion, peroxisome	97.24	97.24
CDY44152	Canola	mitochondrion, peroxisome	97.24	97.24
CDY25787	Canola	mitochondrion, peroxisome	97.24	97.24
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	97.24	97.24
CDY11588	Canola	mitochondrion, peroxisome	97.24	97.24
CDY04706	Canola	mitochondrion, peroxisome	97.24	97.24
AT1G23490.1	Thale cress	mitochondrion, peroxisome	97.24	97.24
AT1G70490.4	Thale cress	mitochondrion, peroxisome	97.24	97.24
AT2G47170.2	Thale cress	mitochondrion	97.24	97.24
Bra016344.1-P	Field mustard	mitochondrion	97.24	97.24
CDX91717	Canola	mitochondrion	97.24	97.24
CDY03747	Canola	mitochondrion, peroxisome	97.24	97.24
CDY09441	Canola	mitochondrion, peroxisome	97.24	97.24
CDY47137	Canola	peroxisome	96.69	96.69
Bra024604.1-P	Field mustard	mitochondrion	96.69	96.69
EER93218	Sorghum	mitochondrion	96.69	96.69
TraesCS2A01G235500.1	Wheat	golgi, plastid	96.69	96.69
EER96075	Sorghum	mitochondrion	96.13	96.13
Os07t0223400-01	Rice	mitochondrion	96.13	96.13
Os07t0223100-01	Rice	plasma membrane	96.13	96.13
VIT_05s0020g00490.t01	Wine grape	cytosol	97.79	95.68
GSMUA_Achr7P18350_001	Banana	cytosol	85.64	93.37
Bra012376.1-P	Field mustard	cytosol	96.69	93.09
Zm00001d005231_P006	Maize	cytosol	95.58	93.01
GSMUA_Achr10P...	Banana	cytosol	85.08	92.77
KRH36902	Soybean	endoplasmic reticulum	93.37	91.85
Zm00001d023657_P001	Maize	cytosol	23.76	91.49
Bra003954.1-P	Field mustard	cytosol	91.16	91.16
CDX68343	Canola	cytosol	91.16	90.66
VIT_01s0127g00440.t01	Wine grape	cytosol, mitochondrion	97.79	90.31
Zm00001d019191_P007	Maize	peroxisome	96.13	87.44
Zm00001d013007_P001	Maize	plastid	97.24	86.7
GSMUA_Achr11P...	Banana	cytosol	95.58	86.5
TraesCS5A01G467400.1	Wheat	cytosol	96.69	82.94
TraesCS5B01G479100.1	Wheat	golgi	96.69	82.94
TraesCS5D01G480200.1	Wheat	unclear	96.69	82.94
CDY23500	Canola	cytosol	90.61	76.64
HORVU5Hr1G111500.2	Barley	mitochondrion	96.69	74.79
GSMUA_Achr3P18390_001	Banana	plasma membrane	95.58	71.49
VIT_07s0129g01090.t01	Wine grape	mitochondrion	75.69	69.19
Zm00001d012537_P003	Maize	cytosol	75.14	67.0
VIT_07s0005g02000.t01	Wine grape	cytosol	97.79	64.6
VIT_04s0008g07360.t01	Wine grape	cytosol, mitochondrion	59.67	59.67
GSMUA_Achr6P08570_001	Banana	cytosol	96.13	54.21
VIT_16s0039g02240.t01	Wine grape	cytosol	57.46	53.89
VIT_14s0060g00690.t01	Wine grape	golgi	97.79	51.45
VIT_05s0020g04460.t01	Wine grape	cytosol	33.15	50.0
VIT_11s0052g01720.t01	Wine grape	cytosol, mitochondrion	58.01	47.3
VIT_04s0023g01820.t01	Wine grape	cytosol	46.41	45.41
VIT_00s2604g00010.t01	Wine grape	extracellular	20.44	37.0
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	34.81	30.73
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	19.89	27.48
VIT_00s0189g00080.t01	Wine grape	cytosol	18.78	22.82

Protein Annotations

EntrezGene:100245580	wikigene:100245580	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:CCB58504	ProteinID:CCB58504.1
UniProt:F6HUY6	EMBL:FN596252	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	EntrezGene:LOC100245580	wikigene:LOC100245580	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGR:TC55564	TIGRFAMs:TIGR00231	UniParc:UPI00021096E9	ArrayExpress:VIT_14s0066g01080	EnsemblPlantsGene:VIT_14s0066g01080	EnsemblPlants:VIT_14s0066g01080.t01
unigene:Vvi.1979	RefSeq:XP_002277054	RefSeq:XP_002277054.2	RefSeq:XP_010660903.1	:	:

Description

No Description!

Coordinates

chr14:+:27537625..27544442

Molecular Weight (calculated)

20712.0 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.220

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDSV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL EWLSNNIATK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.