Factsheet for TraesCS2A01G235500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

mitochondrion 4
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	99.45	99.45
Os07t0223400-01	Rice	mitochondrion	99.45	99.45
Os07t0223100-01	Rice	plasma membrane	99.45	99.45
EER96075	Sorghum	mitochondrion	99.45	99.45
AT2G47170.2	Thale cress	mitochondrion	98.89	98.89
AT1G10630.2	Thale cress	mitochondrion	98.34	98.34
Bra016344.1-P	Field mustard	mitochondrion	98.34	98.34
KRH56584	Soybean	mitochondrion	98.34	98.34
CDX91717	Canola	mitochondrion	98.34	98.34
KRG93262	Soybean	nucleus	98.34	98.34
CDY41444	Canola	mitochondrion	98.34	98.34
AT1G23490.1	Thale cress	mitochondrion, peroxisome	97.79	97.79
PGSC0003DMT400003226	Potato	mitochondrion	97.79	97.79
CDY54291	Canola	mitochondrion, peroxisome	97.79	97.79
CDY44152	Canola	mitochondrion, peroxisome	97.79	97.79
CDY25787	Canola	mitochondrion, peroxisome	97.79	97.79
CDY11588	Canola	mitochondrion, peroxisome	97.79	97.79
CDY09441	Canola	mitochondrion, peroxisome	97.79	97.79
CDY04706	Canola	mitochondrion, peroxisome	97.79	97.79
CDY03747	Canola	mitochondrion, peroxisome	97.79	97.79
AT1G70490.4	Thale cress	mitochondrion, peroxisome	97.79	97.79
CDY47137	Canola	peroxisome	97.24	97.24
Bra024604.1-P	Field mustard	mitochondrion	97.24	97.24
VIT_14s0066g01080.t01	Wine grape	mitochondrion	96.69	96.69
TraesCS3A01G337300.1	Wheat	mitochondrion	96.69	96.15
GSMUA_Achr7P18350_001	Banana	cytosol	87.85	95.78
TraesCS5A01G142100.1	Wheat	cytosol	94.48	94.48
TraesCS1A01G306200.1	Wheat	mitochondrion	96.69	94.09
Bra012376.1-P	Field mustard	cytosol	97.24	93.62
KRH36902	Soybean	endoplasmic reticulum	94.48	92.93
Bra003954.1-P	Field mustard	cytosol	90.61	90.61
Zm00001d019191_P007	Maize	peroxisome	99.45	90.45
CDX68343	Canola	cytosol	90.61	90.11
TraesCS5A01G467400.1	Wheat	cytosol	97.79	83.89
TraesCS5B01G479100.1	Wheat	golgi	97.24	83.41
CDY23500	Canola	cytosol	90.06	76.17
HORVU5Hr1G111500.2	Barley	mitochondrion	97.24	75.21
TraesCS1A01G197800.1	Wheat	golgi	60.77	57.59
TraesCS6A01G268000.1	Wheat	cytosol	59.67	56.54
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	60.77	55.56
TraesCS4A01G149200.1	Wheat	cytosol	52.49	51.63
TraesCS5A01G014900.1	Wheat	cytosol	48.07	47.03
TraesCS6A01G086900.2	Wheat	cytosol	50.28	45.05
TraesCS1A01G421700.1	Wheat	cytosol	47.51	43.65
TraesCS4A01G292900.1	Wheat	cytosol	26.52	38.4
TraesCS1A01G069400.1	Wheat	peroxisome	36.46	32.51

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS2A01G235500	EnsemblPlants:TraesCS2A01G235500.1	TIGR:cd04150	:	:	:

Description

No Description!

Coordinates

chr2A:-:293934939..293967206

Molecular Weight (calculated)

20566.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.176

Length

181 amino acids

Sequence
(BLAST)

001: MGLAFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSSNIASK A

Best Arabidopsis Sequence Match ( AT2G47170.3 )
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.