Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G140900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5D01G150000.1 | Wheat | cytosol | 99.45 | 98.36 |
| GSMUA_Achr10P... | Banana | cytosol | 85.64 | 96.88 |
| TraesCS2A01G235500.1 | Wheat | golgi, plastid | 94.48 | 94.48 |
| GSMUA_Achr4P02310_001 | Banana | mitochondrion | 93.92 | 93.92 |
| GSMUA_Achr4P10250_001 | Banana | mitochondrion | 93.92 | 93.92 |
| TraesCS3A01G337300.1 | Wheat | mitochondrion | 93.37 | 92.86 |
| Zm00001d008295_P002 | Maize | plastid | 92.27 | 92.27 |
| TraesCS1A01G306200.1 | Wheat | mitochondrion | 93.37 | 90.86 |
| TraesCS5A01G467400.1 | Wheat | cytosol | 93.37 | 80.09 |
| HORVU5Hr1G045440.2 | Barley | cytosol, plastid | 100.0 | 71.83 |
| TraesCS1A01G197800.1 | Wheat | golgi | 60.77 | 57.59 |
| TraesCS6A01G268000.1 | Wheat | cytosol | 59.67 | 56.54 |
| TraesCS7A01G284000.3 | Wheat | cytosol, mitochondrion | 59.67 | 54.55 |
| TraesCS4A01G149200.1 | Wheat | cytosol | 53.04 | 52.17 |
| TraesCS5A01G014900.1 | Wheat | cytosol | 47.51 | 46.49 |
| TraesCS6A01G086900.2 | Wheat | cytosol | 49.72 | 44.55 |
| TraesCS1A01G421700.1 | Wheat | cytosol | 46.96 | 43.15 |
| TraesCS4A01G292900.1 | Wheat | cytosol | 25.97 | 37.6 |
| TraesCS1A01G069400.1 | Wheat | peroxisome | 35.91 | 32.02 |
Protein Annotations
| MapMan:22.3.2.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | InterPro:IPR024156 | InterPro:P-loop_NTPase | PFAM:PF00025 |
| PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF182 | SMART:SM00175 | SMART:SM00177 |
| SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | TIGRFAMs:TIGR00231 |
| EnsemblPlantsGene:TraesCS5A01G142100 | EnsemblPlants:TraesCS5A01G142100.1 | TIGR:cd04150 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:315494734..315496888
Molecular Weight (calculated)
20438.6 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.163
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSFGTLFG ALFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRI
101: AEARDELHRM LNEDELRNAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSACA TSGEGLYEGL DWLSNNIASK S
101: AEARDELHRM LNEDELRNAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSACA TSGEGLYEGL DWLSNNIASK S
001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
Arabidopsis Description
ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.