Factsheet for TraesCS6A01G268000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G246900.1	Wheat	cytosol	99.48	99.48
EES07411	Sorghum	cytosol	96.34	94.85
Solyc06g072800.2.1	Tomato	cytosol	64.92	93.94
Zm00001d051546_P001	Maize	cytosol	95.29	93.81
Solyc03g096910.2.1	Tomato	cytosol	64.4	93.18
PGSC0003DMT400069538	Potato	cytosol	91.62	90.67
VIT_16s0039g02240.t01	Wine grape	cytosol	90.58	89.64
KRH27742	Soybean	cytosol	89.01	88.08
TraesCS1A01G197800.1	Wheat	golgi	87.96	87.96
PGSC0003DMT400001454	Potato	cytosol	88.48	87.56
AT5G17060.2	Thale cress	cytosol	87.96	87.5
KRH77702	Soybean	cytosol	80.63	87.5
CDY28739	Canola	cytosol	87.43	86.98
CDY43149	Canola	cytosol	87.43	86.98
Bra032015.1-P	Field mustard	cytosol	87.43	86.98
CDY16963	Canola	cytosol	86.91	86.46
CDX69406	Canola	cytosol	86.91	86.46
AT3G03120.1	Thale cress	cytosol	86.91	86.46
CDY23463	Canola	cytosol	86.39	85.94
Bra008579.1-P	Field mustard	cytosol	86.39	85.94
Bra021371.1-P	Field mustard	cytosol	86.39	85.94
GSMUA_Achr7P04780_001	Banana	cytosol	83.77	85.11
GSMUA_AchrUn_...	Banana	cytosol	82.72	84.95
KRH29023	Soybean	cytosol	86.39	84.62
KRH24049	Soybean	cytosol	85.86	84.1
Zm00001d017717_P001	Maize	cytosol	94.76	81.9
Os02t0699300-01	Rice	cytosol, extracellular, plastid	49.74	76.61
HORVU6Hr1G067840.2	Barley	cytosol	98.95	67.74
TraesCS6A01G086900.2	Wheat	cytosol	70.68	66.83
TraesCS6B01G295200.1	Wheat	plastid	81.68	63.41
TraesCS5A01G142100.1	Wheat	cytosol	56.54	59.67
TraesCS2A01G235500.1	Wheat	golgi, plastid	56.54	59.67
TraesCS3A01G337300.1	Wheat	mitochondrion	56.54	59.34
TraesCS1A01G306200.1	Wheat	mitochondrion	56.02	57.53
TraesCS5A01G467400.1	Wheat	cytosol	56.02	50.71
TraesCS7A01G284000.3	Wheat	cytosol, mitochondrion	51.31	49.49
TraesCS4A01G149200.1	Wheat	cytosol	43.98	45.65
TraesCS5A01G014900.1	Wheat	cytosol	40.31	41.62
TraesCS1A01G421700.1	Wheat	cytosol	39.27	38.07
TraesCS4A01G292900.1	Wheat	cytosol	20.94	32.0
TraesCS1A01G069400.1	Wheat	peroxisome	31.94	30.05

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS6A01G268000
EnsemblPlants:TraesCS6A01G268000.1	TIGR:cd04150	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:494440285..494443153

Molecular Weight (calculated)

21374.0 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.064

Length

191 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD AFFGNSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VLFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKAEFQTI INDPFMLNSV ILVFANKQDM KGAMTPMEVC EGLGLYDLKN RVWHIQGSCA LKGDGLYEGL DWLSSTLKDL QASGRLPSGG T

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.