Factsheet for Solyc03g096910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072800.2.1	Tomato	cytosol	97.73	97.73
Os02t0699300-01	Rice	cytosol, extracellular, plastid	65.91	70.16
PGSC0003DMT400001454	Potato	cytosol	98.48	67.36
PGSC0003DMT400069538	Potato	cytosol	96.21	65.8
VIT_16s0039g02240.t01	Wine grape	cytosol	94.7	64.77
AT5G17060.2	Thale cress	cytosol	93.94	64.58
AT3G03120.1	Thale cress	cytosol	93.94	64.58
TraesCS6D01G246900.1	Wheat	cytosol	93.18	64.4
TraesCS6A01G268000.1	Wheat	cytosol	93.18	64.4
GSMUA_AchrUn_...	Banana	cytosol	90.15	63.98
KRH27742	Soybean	cytosol	93.18	63.73
CDY28739	Canola	cytosol	92.42	63.54
CDY43149	Canola	cytosol	92.42	63.54
CDY16963	Canola	cytosol	92.42	63.54
CDX69406	Canola	cytosol	92.42	63.54
Bra032015.1-P	Field mustard	cytosol	92.42	63.54
CDY23463	Canola	cytosol	91.67	63.02
Bra021371.1-P	Field mustard	cytosol	91.67	63.02
Bra008579.1-P	Field mustard	cytosol	91.67	63.02
EES07411	Sorghum	cytosol	92.42	62.89
GSMUA_Achr7P04780_001	Banana	cytosol	89.39	62.77
Zm00001d051546_P001	Maize	cytosol	91.67	62.37
KRH29023	Soybean	cytosol	91.67	62.05
KRH24049	Soybean	cytosol	90.91	61.54
KRH77702	Soybean	cytosol	79.55	59.66
Zm00001d017717_P001	Maize	cytosol	91.67	54.75
TraesCS6B01G295200.1	Wheat	plastid	93.18	50.0
Solyc01g100860.2.1	Tomato	unclear	61.36	44.75
Solyc05g005190.2.1	Tomato	nucleus	61.36	44.75
HORVU6Hr1G067840.2	Barley	cytosol	93.94	44.44
Solyc02g092970.2.1	Tomato	cytosol	60.61	41.88
Solyc07g006640.2.1	Tomato	plastid	57.58	41.76
Solyc01g008000.2.1	Tomato	plastid, unclear	62.12	39.23
Solyc01g100870.2.1	Tomato	plastid	61.36	38.57
Solyc03g005300.2.1	Tomato	cytosol	47.73	34.43
Solyc07g014650.2.1	Tomato	cytosol	37.88	29.59
Solyc12g099080.1.1	Tomato	unclear	38.64	22.87
Solyc10g074630.1.1	Tomato	cytosol	32.58	22.28
Solyc04g025560.2.1	Tomato	unclear	42.42	22.13

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4BJA9	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc03g096910.2	EnsemblPlants:Solyc03g096910.2.1	TIGRFAMs:TIGR00231
UniParc:UPI0002767FC7	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59276338..59283003

Molecular Weight (calculated)

15205.6 Da

IEP (calculated)

8.893

GRAVY (calculated)

0.006

Length

132 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNSEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKLEFQAI IRDPFMLNAI ILVFANKQDM EQ

Best Arabidopsis Sequence Match ( AT3G03120.2 )
(BLAST)

001: MGQTFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VIFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQDI IRDPFMLNSV ILVFANKQDM VKVHRL

Arabidopsis Description

ATARFB1CATARFB1C [Source:UniProtKB/TrEMBL;Acc:A0A178VH47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.