Factsheet for Bra008579.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16963	Canola	cytosol	99.48	99.48
CDX69406	Canola	cytosol	99.48	99.48
AT5G17060.2	Thale cress	cytosol	97.92	97.92
Bra032015.1-P	Field mustard	cytosol	93.75	93.75
Bra021371.1-P	Field mustard	cytosol	93.23	93.23
Solyc03g096910.2.1	Tomato	cytosol	63.02	91.67
Solyc06g072800.2.1	Tomato	cytosol	63.02	91.67
PGSC0003DMT400001454	Potato	cytosol	89.58	89.12
PGSC0003DMT400069538	Potato	cytosol	89.58	89.12
KRH27742	Soybean	cytosol	89.06	88.6
KRH29023	Soybean	cytosol	89.06	87.69
VIT_16s0039g02240.t01	Wine grape	cytosol	88.02	87.56
KRH77702	Soybean	cytosol	80.21	87.5
KRH24049	Soybean	cytosol	88.54	87.18
TraesCS6A01G268000.1	Wheat	cytosol	85.94	86.39
TraesCS6D01G246900.1	Wheat	cytosol	85.42	85.86
EES07411	Sorghum	cytosol	84.38	83.51
Zm00001d051546_P001	Maize	cytosol	83.33	82.47
GSMUA_AchrUn_...	Banana	cytosol	78.65	81.18
GSMUA_Achr7P04780_001	Banana	cytosol	78.12	79.79
Os02t0699300-01	Rice	cytosol, extracellular, plastid	48.96	75.81
Zm00001d017717_P001	Maize	cytosol	84.38	73.3
HORVU6Hr1G067840.2	Barley	cytosol	85.94	59.14
Bra016344.1-P	Field mustard	mitochondrion	55.73	59.12
Bra004475.1-P	Field mustard	cytosol	55.73	59.12
Bra027153.1-P	Field mustard	cytosol	55.73	59.12
Bra024604.1-P	Field mustard	mitochondrion	55.73	59.12
Bra021387.1-P	Field mustard	cytosol	55.73	59.12
Bra014403.1-P	Field mustard	cytosol	55.21	58.56
Bra016215.1-P	Field mustard	cytosol	55.21	58.56
TraesCS6B01G295200.1	Wheat	plastid	73.44	57.32
Bra012376.1-P	Field mustard	cytosol	55.73	56.91
Bra000443.1-P	Field mustard	cytosol	56.25	56.25
Bra008746.1-P	Field mustard	mitochondrion	55.21	56.08
Bra011295.1-P	Field mustard	cytosol	52.6	55.49
Bra003954.1-P	Field mustard	cytosol	52.08	55.25
Bra032062.1-P	Field mustard	cytosol	51.56	54.4
Bra007833.1-P	Field mustard	cytosol	51.56	54.4
Bra007917.1-P	Field mustard	cytosol	39.58	50.67
Bra039725.1-P	Field mustard	cytosol	44.27	46.45
Bra036878.1-P	Field mustard	cytosol	43.75	45.9
Bra039613.1-P	Field mustard	cytosol	40.1	41.62
Bra024470.1-P	Field mustard	cytosol	39.06	40.54
Bra029132.1-P	Field mustard	cytosol	30.73	29.35
Bra028298.1-P	Field mustard	cytosol	30.73	29.35
Bra036410.1-P	Field mustard	mitochondrion	52.08	23.81

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra008579	EnsemblPlants:Bra008579.1	EnsemblPlants:Bra008579.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4CWI2	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF300	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00025446AB	:	:	:

Description

AT5G17060 (E=1e-107) ATARFB1B | ATARFB1B; GTP binding

Coordinates

chrA10:-:12900406..12902012

Molecular Weight (calculated)

21837.6 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.117

Length

192 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVEYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERL
101: VKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGP SF

Best Arabidopsis Sequence Match ( AT5G17060.2 )
(BLAST)

001: MGQAFRKLFD TFFGNQEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VMFTVWDVGG QEKLRPLWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQEI IKDPFMLNSI ILVFANKQDM RGAMSPREVC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSSTLKDV KAAGFTSVGH SF

Arabidopsis Description

ATARFB1BADP-ribosylation factor B1B [Source:UniProtKB/TrEMBL;Acc:Q9LFJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.