Factsheet for Bra016215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 3
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004475.1-P	Field mustard	cytosol	96.69	96.69
Bra016344.1-P	Field mustard	mitochondrion	96.69	96.69
Bra024604.1-P	Field mustard	mitochondrion	96.69	96.69
Bra027153.1-P	Field mustard	cytosol	96.13	96.13
Bra014403.1-P	Field mustard	cytosol	96.13	96.13
Bra021387.1-P	Field mustard	cytosol	96.13	96.13
Bra012376.1-P	Field mustard	cytosol	97.24	93.62
AT5G14670.1	Thale cress	mitochondrion	95.58	92.02
Bra008746.1-P	Field mustard	mitochondrion	95.03	91.01
Bra000443.1-P	Field mustard	cytosol	95.58	90.1
Bra003954.1-P	Field mustard	cytosol	90.06	90.06
CDX75849	Canola	cytosol	56.35	88.7
Bra007917.1-P	Field mustard	cytosol	70.72	85.33
TraesCS5B01G479100.1	Wheat	golgi	95.03	81.52
HORVU5Hr1G111500.2	Barley	mitochondrion	95.03	73.5
Bra011295.1-P	Field mustard	cytosol	59.12	58.79
Bra032062.1-P	Field mustard	cytosol	58.56	58.24
Bra007833.1-P	Field mustard	cytosol	58.56	58.24
Bra008579.1-P	Field mustard	cytosol	58.56	55.21
Bra021371.1-P	Field mustard	cytosol	58.01	54.69
Bra032015.1-P	Field mustard	cytosol	58.01	54.69
Bra036878.1-P	Field mustard	cytosol	53.04	52.46
Bra039725.1-P	Field mustard	cytosol	53.04	52.46
Bra039613.1-P	Field mustard	cytosol	47.51	46.49
Bra024470.1-P	Field mustard	cytosol	46.41	45.41
Bra028298.1-P	Field mustard	cytosol	33.7	30.35
Bra029132.1-P	Field mustard	cytosol	33.7	30.35
Bra036410.1-P	Field mustard	mitochondrion	62.43	26.9

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016215	EnsemblPlants:Bra016215.1	EnsemblPlants:Bra016215.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4DI88	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0002541997	SEG:seg	:

Description

AT1G70490 (E=7e-091) ATARFA1D, ARFA1D | ARFA1D; GTP binding / phospholipase activator/ protein binding

Coordinates

chrA07:-:18833507..18834444

Molecular Weight (calculated)

20559.8 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.228

Length

181 amino acids

Sequence
(BLAST)

001: MGLSFAKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLAHNNAGK G

Best Arabidopsis Sequence Match ( AT1G70490.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A

Arabidopsis Description

ARF2-AADP-ribosylation factor 2-B [Source:UniProtKB/Swiss-Prot;Acc:P0DH91]
SUBAcon: [mitochondrion,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.