Factsheet for Bra036410.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 6
endoplasmic reticulum 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010159.1-P
Bra023263.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G15310.1	Bra010159.1-P	AT1G32380.1	21798944
AT2G15310.1	Bra023263.1-P	AT1G32380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71216	Canola	mitochondrion	49.76	100.0
CDY48224	Canola	mitochondrion	48.33	99.02
AT2G15310.1	Thale cress	mitochondrion	43.57	89.27
PGSC0003DMT400075807	Potato	cytosol	27.86	64.64
PGSC0003DMT400064241	Potato	cytosol	27.86	64.64
Bra027153.1-P	Field mustard	cytosol	27.86	64.64
PGSC0003DMT400064240	Potato	cytosol	25.95	64.12
Bra004475.1-P	Field mustard	cytosol	27.62	64.09
Bra016344.1-P	Field mustard	mitochondrion	27.62	64.09
Bra024604.1-P	Field mustard	mitochondrion	27.38	63.54
Bra014403.1-P	Field mustard	cytosol	27.38	63.54
Bra021387.1-P	Field mustard	cytosol	27.38	63.54
Bra000443.1-P	Field mustard	cytosol	28.57	62.5
Bra016215.1-P	Field mustard	cytosol	26.9	62.43
Bra012376.1-P	Field mustard	cytosol	27.86	62.23
Bra008746.1-P	Field mustard	mitochondrion	27.62	61.38
Bra003954.1-P	Field mustard	cytosol	26.19	60.77
Solyc02g092970.2.1	Tomato	cytosol	27.38	60.21
Bra007917.1-P	Field mustard	cytosol	20.0	56.0
Bra008579.1-P	Field mustard	cytosol	23.81	52.08
Bra011295.1-P	Field mustard	cytosol	22.38	51.65
Bra032062.1-P	Field mustard	cytosol	22.38	51.65
Bra007833.1-P	Field mustard	cytosol	22.38	51.65
Bra021371.1-P	Field mustard	cytosol	23.33	51.04
Bra032015.1-P	Field mustard	cytosol	23.33	51.04
OQU85607	Sorghum	cytosol, mitochondrion	20.48	48.04
Zm00001d017650_P002	Maize	cytosol	20.0	47.19
Bra039725.1-P	Field mustard	cytosol	19.76	45.36
Bra036878.1-P	Field mustard	cytosol	19.52	44.81
Bra039613.1-P	Field mustard	cytosol	18.57	42.16
Bra024470.1-P	Field mustard	cytosol	17.86	40.54
Bra029132.1-P	Field mustard	cytosol	13.1	27.36
Bra028298.1-P	Field mustard	cytosol	12.62	26.37

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra036410	EnsemblPlants:Bra036410.1	EnsemblPlants:Bra036410.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4F5Q4	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF297	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000254121E	SEG:seg	:

Description

AT2G15310 (E=3e-095) ATARFB1A | ATARFB1A (ADP-ribosylation factor B1A); GTP binding

Coordinates

chrA07:+:2432171..2435203

Molecular Weight (calculated)

47518.8 Da

IEP (calculated)

9.156

GRAVY (calculated)

-0.485

Length

420 amino acids

Sequence
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNSQGLIF VVDSSDSARL
101: SEARNELHRI LTNNELQNAC VLVFANKQDS RNALPVDQVA NNLGLHGLTK RCWFIQGTSA ITGQGLYEGL EWLSKTIPNK TERSSSLGSF RSDSSERRLV
201: RGVNLTDSTG QYGSNNETLP PPIEPEHQLV ASLDPLIFTT ERTRSPTLTL PEDLKFPDPP IVHLNTAEPT VNLPVAAETQ PQQTALETLI RCLSRNKTLT
301: LLFSVDTCTQ PVRGLNNKTI SEYVLARSGN DPQRYEKLLE RHFTRADHLE VDERKNNRSM RIIADDRYQE ILRQMKINID RCTQVPSIDV ETPDTRHFGF
401: SRLKNQGQAK LPKCPDEFLT

Best Arabidopsis Sequence Match ( AT2G15310.1 )
(BLAST)

001: MGARFSRIAK RFLPKSKVRI LMVGLDGSGK TTILYKLKLG EVVTTVPTIG FNLETVEYKG INFTVWDIGG QEKIRKLWRH YFQNAQGLIF VVDSSDSERL
101: SEARNELHRI LTDNELEGAC VLVFANKQDS RNALPVAEVA NKLGLHSLSK RCWLIQGTSA ISGQGLYEGL EWLSTTIPNK PERSTSVSSF RSDSYERKLV
201: RGPRY

Arabidopsis Description

ATARFB1AProbable ADP-ribosylation factor At2g15310 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHU5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.