Factsheet for Bra036878.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29751	Canola	cytosol	100.0	100.0
Bra039725.1-P	Field mustard	cytosol	97.27	97.27
AT3G22950.1	Thale cress	cytosol	94.54	94.54
Solyc03g005300.2.1	Tomato	cytosol	86.89	86.89
KRG92448	Soybean	endoplasmic reticulum	86.89	86.89
KRH34351	Soybean	endoplasmic reticulum	86.34	86.34
PGSC0003DMT400034971	Potato	cytosol	86.34	86.34
KRG92441	Soybean	endoplasmic reticulum	85.79	85.79
VIT_05s0020g04460.t01	Wine grape	cytosol	55.19	84.17
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	83.06	83.06
Os11t0586900-02	Rice	cytosol	83.06	82.61
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	82.51	82.51
KRH34356	Soybean	cytosol, extracellular	61.75	81.3
TraesCS4D01G152600.1	Wheat	cytosol	81.42	80.98
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	80.87	80.43
EES08754	Sorghum	cytosol, mitochondrion	80.87	80.43
TraesCS4A01G149200.1	Wheat	cytosol	80.87	80.43
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.33	79.89
Zm00001d052978_P001	Maize	extracellular	79.78	79.35
Bra027153.1-P	Field mustard	cytosol	52.46	53.04
Bra016215.1-P	Field mustard	cytosol	52.46	53.04
Bra021387.1-P	Field mustard	cytosol	51.91	52.49
Bra016344.1-P	Field mustard	mitochondrion	51.91	52.49
Bra004475.1-P	Field mustard	cytosol	51.91	52.49
Bra014403.1-P	Field mustard	cytosol	51.91	52.49
Bra024604.1-P	Field mustard	mitochondrion	51.37	51.93
Bra003954.1-P	Field mustard	cytosol	50.27	50.83
Bra012376.1-P	Field mustard	cytosol	51.91	50.53
Bra008746.1-P	Field mustard	mitochondrion	51.91	50.26
Bra000443.1-P	Field mustard	cytosol	52.46	50.0
Bra032062.1-P	Field mustard	cytosol	49.18	49.45
Bra007833.1-P	Field mustard	cytosol	49.18	49.45
Bra011295.1-P	Field mustard	cytosol	48.09	48.35
Bra021371.1-P	Field mustard	cytosol	48.09	45.83
Bra007917.1-P	Field mustard	cytosol	37.16	45.33
Bra032015.1-P	Field mustard	cytosol	47.54	45.31
Bra008579.1-P	Field mustard	cytosol	45.9	43.75
Bra039613.1-P	Field mustard	cytosol	37.7	37.3
Bra024470.1-P	Field mustard	cytosol	36.61	36.22
Bra028298.1-P	Field mustard	cytosol	32.24	29.35
Bra029132.1-P	Field mustard	cytosol	31.69	28.86
Bra036410.1-P	Field mustard	mitochondrion	44.81	19.52

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra036878	EnsemblPlants:Bra036878.1	EnsemblPlants:Bra036878.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M4F718	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00025451D5	:	:

Description

AT3G22950 (E=3e-098) ATARFC1 | ATARFC1 (ADP-ribosylation factor C1); GTP binding

Coordinates

chrA01:-:12444026..12445029

Molecular Weight (calculated)

20511.5 Da

IEP (calculated)

6.724

GRAVY (calculated)

-0.169

Length

183 amino acids

Sequence
(BLAST)

001: MGAFASRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTNAVIV VIDSTDRARI
101: SLMKDELSRL LGHEDLHNSV ILVFANKQDL KDAMSPAEIT DALNLHSIKN HDWHIQASCA VTGEGLHDGL GWIAQKVTEK PPS

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.