Factsheet for TraesCS4D01G152600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G149200.1	Wheat	cytosol	98.37	98.37
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	97.83	97.83
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	97.28	97.28
Os11t0586900-02	Rice	cytosol	95.11	95.11
EES08754	Sorghum	cytosol, mitochondrion	94.02	94.02
Zm00001d052978_P001	Maize	extracellular	92.93	92.93
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	84.78	85.25
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	84.24	84.7
AT3G22950.1	Thale cress	cytosol	83.7	84.15
Bra039725.1-P	Field mustard	cytosol	82.07	82.51
CDY53727	Canola	cytosol	82.07	82.51
VIT_05s0020g04460.t01	Wine grape	cytosol	53.8	82.5
KRG92448	Soybean	endoplasmic reticulum	81.52	81.97
Solyc03g005300.2.1	Tomato	cytosol	80.98	81.42
KRH34351	Soybean	endoplasmic reticulum	80.98	81.42
Bra036878.1-P	Field mustard	cytosol	80.98	81.42
CDY16265	Canola	cytosol	80.98	81.42
CDY29751	Canola	cytosol	80.98	81.42
CDY36874	Canola	cytosol	80.98	81.42
KRG92441	Soybean	endoplasmic reticulum	80.98	81.42
PGSC0003DMT400034971	Potato	cytosol	80.43	80.87
KRH34356	Soybean	cytosol, extracellular	58.15	76.98
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	52.17	53.04
TraesCS5D01G150000.1	Wheat	cytosol	52.72	53.01
TraesCS5D01G480200.1	Wheat	unclear	52.17	45.5
TraesCS6D01G246900.1	Wheat	cytosol	46.2	44.5
TraesCS1D01G201300.1	Wheat	cytosol	45.65	43.98
TraesCS7D01G282400.1	Wheat	cytosol, mitochondrion	45.65	42.42
TraesCS3D01G330500.1	Wheat	cytosol	52.17	38.25
TraesCS1D01G305900.1	Wheat	golgi	52.17	36.5
TraesCS1D01G429700.1	Wheat	cytosol	34.78	34.59
TraesCS5D01G020800.1	Wheat	cytosol	34.24	34.05
TraesCS1D01G072000.1	Wheat	peroxisome	32.07	29.06
TraesCS2D01G172000.1	Wheat	peroxisome	29.89	27.64
TraesCS4D01G018600.1	Wheat	cytosol	20.65	26.03

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS4D01G152600	EnsemblPlants:TraesCS4D01G152600.1	TIGR:cd04153	:	:	:

Description

No Description!

Coordinates

chr4D:-:185796008..185798125

Molecular Weight (calculated)

20354.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

0.053

Length

184 amino acids

Sequence
(BLAST)

001: MGAWMSRVWF LMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EAVTAAPTIG SNVEEVVFKN IRFEVWDLGG QESLRASWAT YYRGTHAVIV VIDSTDRARI
101: NIIKDELFRL IQHADLDNTV VLVFANKQDL KDAMSAAEIT DALSLHSIKN HDWHIQASCA ITGEGLYDGM GWIAQKVAGK ATAS

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.