CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29751	Canola	cytosol	99.45	99.45
CDY53727	Canola	cytosol	97.81	97.81
CDY36874	Canola	cytosol	97.27	97.27
AT3G22950.1	Thale cress	cytosol	95.08	95.08
KRG92448	Soybean	endoplasmic reticulum	87.43	87.43
Solyc03g005300.2.1	Tomato	cytosol	87.43	87.43
PGSC0003DMT400034971	Potato	cytosol	86.89	86.89
KRH34351	Soybean	endoplasmic reticulum	86.89	86.89
KRG92441	Soybean	endoplasmic reticulum	86.34	86.34
VIT_05s0020g04460.t01	Wine grape	cytosol	55.74	85.0
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	83.06	83.06
Os11t0586900-02	Rice	cytosol	83.06	82.61
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	82.51	82.51
KRH34356	Soybean	cytosol, extracellular	62.3	82.01
TraesCS4D01G152600.1	Wheat	cytosol	81.42	80.98
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	80.87	80.43
EES08754	Sorghum	cytosol, mitochondrion	80.87	80.43
TraesCS4A01G149200.1	Wheat	cytosol	80.87	80.43
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.33	79.89
Zm00001d052978_P001	Maize	extracellular	79.78	79.35
CDY47221	Canola	mitochondrion	52.46	53.04
CDY53050	Canola	cytosol	52.46	53.04
CDX89139	Canola	cytosol	51.91	52.49
CDY41444	Canola	mitochondrion	51.91	52.49
CDY37791	Canola	cytosol	51.91	52.49
CDY44152	Canola	mitochondrion, peroxisome	51.91	52.49
CDY47137	Canola	peroxisome	51.91	52.49
CDY51415	Canola	cytosol	51.91	52.49
CDX80083	Canola	cytosol	51.91	52.49
CDY54291	Canola	mitochondrion, peroxisome	51.91	52.49
CDY27506	Canola	cytosol	51.91	52.49
CDX91717	Canola	mitochondrion	51.91	52.49
CDY25787	Canola	mitochondrion, peroxisome	51.91	52.49
CDX93979	Canola	mitochondrion, peroxisome	51.91	52.49
CDY03747	Canola	mitochondrion, peroxisome	51.91	52.49
CDY04706	Canola	mitochondrion, peroxisome	51.91	52.49
CDY09441	Canola	mitochondrion, peroxisome	51.91	52.49
CDY11588	Canola	mitochondrion, peroxisome	51.91	52.49
CDX68343	Canola	cytosol	50.82	51.1
CDX95712	Canola	cytosol	51.91	50.0
CDX83340	Canola	cytosol	51.91	49.74
CDY45596	Canola	cytosol	49.18	49.45
CDY34756	Canola	cytosol	49.18	49.45
CDX76793	Canola	cytosol	49.18	49.45
CDX68781	Canola	cytosol	48.09	48.35
CDX75192	Canola	cytosol	48.09	48.35
CDY36172	Canola	cytosol	47.54	47.8
CDX69567	Canola	mitochondrion	51.91	46.12
CDY23463	Canola	cytosol	48.09	45.83
CDY43149	Canola	cytosol	47.54	45.31
CDY28739	Canola	cytosol	47.54	45.31
CDX75849	Canola	cytosol	28.42	45.22
CDY09875	Canola	mitochondrion	51.91	44.6
CDX69406	Canola	cytosol	45.9	43.75
CDY16963	Canola	cytosol	45.9	43.75
CDY23500	Canola	cytosol	50.27	42.99
CDY48224	Canola	mitochondrion	45.36	40.49
CDX71216	Canola	mitochondrion	45.36	39.71
CDY29231	Canola	cytosol	37.7	37.3
CDY36479	Canola	cytosol	37.7	37.3
CDY31913	Canola	cytosol	33.33	29.61
CDY00519	Canola	cytosol	33.33	29.61
CDY38908	Canola	cytosol	32.79	29.27
CDY13039	Canola	cytosol	37.7	28.16
CDY32591	Canola	cytosol	32.79	23.72
CDY25962	Canola	mitochondrion	31.69	20.94

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:A0A078FP84	UniProt:A0A078FP84	EnsemblPlants:CDY16265	ProteinID:CDY16265
ProteinID:CDY16265.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00090748001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EB420B

Description

BnaC01g23000DBnaC01g23000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FP84]

Coordinates

chrLK032062:-:199686..201307

Molecular Weight (calculated)

20502.5 Da

IEP (calculated)

6.632

GRAVY (calculated)

-0.171

Length

183 amino acids

Sequence
(BLAST)

001: MGAFASRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTNAVIV VIDSTDRARI
101: SLMKDELSRL LGHEDLQNSV ILVFANKQDL KDAMSPAEIT DALNLHSIKN HDWHIQASCA VTGEGLHDGL GWIAQKVTEK PPS

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.