CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021387.1-P	Field mustard	cytosol	94.74	99.45
CDY27506	Canola	cytosol	94.74	99.45
CDY37791	Canola	cytosol	94.74	99.45
CDX89139	Canola	cytosol	94.74	99.45
CDX80083	Canola	cytosol	94.74	99.45
CDY51415	Canola	cytosol	94.74	99.45
CDX83340	Canola	cytosol	99.47	98.95
CDY53050	Canola	cytosol	94.21	98.89
CDX93979	Canola	mitochondrion, peroxisome	94.21	98.89
Solyc01g100860.2.1	Tomato	unclear	94.21	98.89
CDY47221	Canola	mitochondrion	93.68	98.34
CDY47137	Canola	peroxisome	93.68	98.34
CDX91717	Canola	mitochondrion	93.68	98.34
CDY41444	Canola	mitochondrion	93.68	98.34
CDY44152	Canola	mitochondrion, peroxisome	93.16	97.79
CDY54291	Canola	mitochondrion, peroxisome	93.16	97.79
CDY03747	Canola	mitochondrion, peroxisome	93.16	97.79
CDY04706	Canola	mitochondrion, peroxisome	93.16	97.79
CDY09441	Canola	mitochondrion, peroxisome	93.16	97.79
CDY11588	Canola	mitochondrion, peroxisome	93.16	97.79
CDY25787	Canola	mitochondrion, peroxisome	93.16	97.79
Bra000443.1-P	Field mustard	cytosol	98.42	97.4
Zm00001d043113_P001	Maize	plastid	93.68	97.27
GSMUA_Achr5P07760_001	Banana	mitochondrion	92.63	97.24
CDX68343	Canola	cytosol	87.37	91.21
CDX75849	Canola	cytosol	54.21	89.57
CDX69567	Canola	mitochondrion	94.21	86.89
CDY09875	Canola	mitochondrion	94.21	84.04
CDY23500	Canola	cytosol	87.37	77.57
OQU87737	Sorghum	cytosol	93.68	67.17
CDX68781	Canola	cytosol	57.37	59.89
CDX75192	Canola	cytosol	57.37	59.89
CDX76793	Canola	cytosol	56.84	59.34
CDY34756	Canola	cytosol	56.84	59.34
CDY45596	Canola	cytosol	56.84	59.34
CDY48224	Canola	mitochondrion	63.16	58.54
CDX71216	Canola	mitochondrion	63.16	57.42
CDY36172	Canola	cytosol	54.74	57.14
CDY23463	Canola	cytosol	56.84	56.25
CDY43149	Canola	cytosol	56.84	56.25
CDY28739	Canola	cytosol	56.84	56.25
CDX69406	Canola	cytosol	56.32	55.73
CDY16963	Canola	cytosol	56.32	55.73
CDY36874	Canola	cytosol	50.0	51.91
CDY29751	Canola	cytosol	50.0	51.91
CDY53727	Canola	cytosol	50.0	51.91
CDY16265	Canola	cytosol	50.0	51.91
CDY36479	Canola	cytosol	45.79	47.03
CDY29231	Canola	cytosol	45.79	47.03
CDY13039	Canola	cytosol	45.79	35.51
CDY25962	Canola	mitochondrion	50.0	34.3
CDY38908	Canola	cytosol	33.16	30.73
CDY00519	Canola	cytosol	33.16	30.58
CDY31913	Canola	cytosol	33.16	30.58
CDY32591	Canola	cytosol	33.16	24.9

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:A0A078E3J9	EnsemblPlants:CDX95712	ProteinID:CDX95712	ProteinID:CDX95712.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	EnsemblPlantsGene:GSBRNA2T00101609001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EEA9A3

Description

BnaC03g25930D

Coordinates

chrLK031890:+:874130..875570

Molecular Weight (calculated)

21580.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.169

Length

190 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK VSSSSSTFLF

Best Arabidopsis Sequence Match ( AT2G47170.1 )
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.