CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029132.1-P	Field mustard	cytosol	98.05	100.0
CDY31913	Canola	cytosol	95.12	94.66
CDY00519	Canola	cytosol	95.12	94.66
AT5G52210.2	Thale cress	cytosol	94.15	94.15
CDY32591	Canola	cytosol	100.0	81.03
Solyc10g074630.1.1	Tomato	cytosol	75.61	80.31
VIT_00s0215g00070.t01	Wine grape	endoplasmic reticulum	78.05	78.05
KRH11380	Soybean	endoplasmic reticulum	77.56	77.94
KRH20906	Soybean	endoplasmic reticulum	76.59	76.96
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.1	76.85
GSMUA_Achr5P00190_001	Banana	extracellular	75.12	75.86
Os03t0392300-01	Rice	cytosol	70.73	71.43
EER99714	Sorghum	cytosol	70.24	70.94
TraesCS1A01G069400.1	Wheat	peroxisome	69.27	69.95
Os07t0620400-01	Rice	cytosol	69.27	69.95
TraesCS1B01G087700.1	Wheat	peroxisome	68.78	69.8
TraesCS1D01G072000.1	Wheat	peroxisome	68.78	69.46
Zm00001d029408_P001	Maize	endoplasmic reticulum	67.32	68.32
HORVU1Hr1G014610.1	Barley	cytosol	67.32	67.98
VIT_19s0027g00160.t01	Wine grape	cytosol, extracellular	43.41	67.94
EER94751	Sorghum	cytosol	66.83	67.82
VIT_00s0189g00080.t01	Wine grape	cytosol	49.27	67.79
TraesCS2D01G172000.1	Wheat	peroxisome	61.46	63.32
Zm00001d022172_P001	Maize	golgi, peroxisome	69.76	60.85
PGSC0003DMT400043326	Potato	cytosol	69.76	60.34
TraesCS2B01G191100.2	Wheat	cytosol, plastid	58.05	55.61
CDX68343	Canola	cytosol	31.71	35.71
CDX75192	Canola	cytosol	31.22	35.16
CDX68781	Canola	cytosol	31.22	35.16
CDX80083	Canola	cytosol	30.73	34.81
CDX89139	Canola	cytosol	30.73	34.81
CDX91717	Canola	mitochondrion	30.73	34.81
CDX93979	Canola	mitochondrion, peroxisome	30.73	34.81
CDY47221	Canola	mitochondrion	30.73	34.81
CDY54291	Canola	mitochondrion, peroxisome	30.73	34.81
CDY53050	Canola	cytosol	30.73	34.81
CDY51415	Canola	cytosol	30.73	34.81
CDY04706	Canola	mitochondrion, peroxisome	30.73	34.81
CDY47137	Canola	peroxisome	30.73	34.81
CDY44152	Canola	mitochondrion, peroxisome	30.73	34.81
CDY09441	Canola	mitochondrion, peroxisome	30.73	34.81
CDY37791	Canola	cytosol	30.73	34.81
CDY41444	Canola	mitochondrion	30.73	34.81
CDY27506	Canola	cytosol	30.73	34.81
CDY25787	Canola	mitochondrion, peroxisome	30.73	34.81
CDY11588	Canola	mitochondrion, peroxisome	30.73	34.81
CDY03747	Canola	mitochondrion, peroxisome	30.73	34.81
CDX76793	Canola	cytosol	30.24	34.07
CDY34756	Canola	cytosol	30.24	34.07
CDY45596	Canola	cytosol	30.24	34.07
CDY36479	Canola	cytosol	30.73	34.05
CDY29231	Canola	cytosol	30.73	34.05
CDY36874	Canola	cytosol	29.76	33.33
CDX95712	Canola	cytosol	30.73	33.16
CDX75849	Canola	cytosol	18.54	33.04
CDY53727	Canola	cytosol	29.27	32.79
CDY16265	Canola	cytosol	29.27	32.79
CDX83340	Canola	cytosol	30.24	32.46
CDY36172	Canola	cytosol	28.78	32.42
CDY29751	Canola	cytosol	28.78	32.24
CDY23500	Canola	cytosol	32.68	31.31
CDX69406	Canola	cytosol	29.27	31.25
CDY16963	Canola	cytosol	29.27	31.25
CDY23463	Canola	cytosol	28.78	30.73
CDX69567	Canola	mitochondrion	30.73	30.58
CDY28739	Canola	cytosol	28.29	30.21
CDY43149	Canola	cytosol	28.29	30.21
CDY09875	Canola	mitochondrion	30.73	29.58
CDY48224	Canola	mitochondrion	27.32	27.32
CDX71216	Canola	mitochondrion	27.32	26.79
CDY13039	Canola	cytosol	30.73	25.71
CDY25962	Canola	mitochondrion	19.02	14.08

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078HQ56	UniProt:A0A078HQ56	EnsemblPlants:CDY38908	ProteinID:CDY38908
ProteinID:CDY38908.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00066757001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF218	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0004EDBDCE

Description

BnaA03g12710DBnaA03g12710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ56]

Coordinates

chrLK032434:+:276700..277735

Molecular Weight (calculated)

23256.1 Da

IEP (calculated)

6.368

GRAVY (calculated)

-0.199

Length

205 amino acids

Sequence
(BLAST)

001: MFSLMHGLWS YMFSKTEFHV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVSNAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPSRFEES KSALEKALRH EDLQGAPLLI LANKQDLSNA VSAEELDRYL DLKKLDERVY MFEPVSGYDG RGIKESVEWL VGVMERSKRT ETLRARTGYV
201: PVPSS

Best Arabidopsis Sequence Match ( AT5G52210.2 )
(BLAST)

001: MFSLMSGLWS YMFSKTEFNV LILGIDKAGK TTFLEKLKTI YSISEGLPHD RIVPTVGLNI GRIEVSNAKI VFWDLGGQPG LRSIWEKYYE EAHALIYLID
101: AACPTRFEDS KSALEKALRH EDLQGAPLLI LANKQDLTNA VSAEELDRYL DLKKLDERVY MFEAVSGYDG RGIKESIEWL VGVMEKSKRT ESLRARAGYT
201: PVPNS

Arabidopsis Description

ATARLB1At5g52210 [Source:UniProtKB/TrEMBL;Acc:Q38921]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.