CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47221	Canola	mitochondrion	90.43	57.46
CDY41444	Canola	mitochondrion	90.43	57.46
CDX93979	Canola	mitochondrion, peroxisome	90.43	57.46
CDX91717	Canola	mitochondrion	90.43	57.46
CDX80083	Canola	cytosol	89.57	56.91
CDY09441	Canola	mitochondrion, peroxisome	89.57	56.91
CDY04706	Canola	mitochondrion, peroxisome	89.57	56.91
CDY03747	Canola	mitochondrion, peroxisome	89.57	56.91
CDY11588	Canola	mitochondrion, peroxisome	89.57	56.91
CDY25787	Canola	mitochondrion, peroxisome	89.57	56.91
CDX89139	Canola	cytosol	89.57	56.91
CDY27506	Canola	cytosol	89.57	56.91
CDY37791	Canola	cytosol	89.57	56.91
CDY44152	Canola	mitochondrion, peroxisome	89.57	56.91
CDY51415	Canola	cytosol	89.57	56.91
CDY53050	Canola	cytosol	89.57	56.91
CDY54291	Canola	mitochondrion, peroxisome	89.57	56.91
Bra016215.1-P	Field mustard	cytosol	88.7	56.35
CDY47137	Canola	peroxisome	88.7	56.35
AT5G14670.1	Thale cress	mitochondrion	88.7	54.26
CDX95712	Canola	cytosol	89.57	54.21
CDX83340	Canola	cytosol	88.7	53.4
CDX68343	Canola	cytosol	82.61	52.2
CDX69567	Canola	mitochondrion	88.7	49.51
TraesCS5B01G479100.1	Wheat	golgi	88.7	48.34
CDY09875	Canola	mitochondrion	88.7	47.89
CDY23500	Canola	cytosol	84.35	45.33
HORVU5Hr1G111500.2	Barley	mitochondrion	88.7	43.59
CDX75192	Canola	cytosol	57.39	36.26
CDX68781	Canola	cytosol	57.39	36.26
CDY45596	Canola	cytosol	56.52	35.71
CDY34756	Canola	cytosol	56.52	35.71
CDX76793	Canola	cytosol	56.52	35.71
CDY48224	Canola	mitochondrion	63.48	35.61
CDX71216	Canola	mitochondrion	63.48	34.93
CDY36172	Canola	cytosol	54.78	34.62
CDY23463	Canola	cytosol	54.78	32.81
CDY43149	Canola	cytosol	54.78	32.81
CDY28739	Canola	cytosol	54.78	32.81
CDY16963	Canola	cytosol	53.91	32.29
CDX69406	Canola	cytosol	53.91	32.29
CDY36874	Canola	cytosol	45.22	28.42
CDY29751	Canola	cytosol	45.22	28.42
CDY53727	Canola	cytosol	45.22	28.42
CDY16265	Canola	cytosol	45.22	28.42
CDY36479	Canola	cytosol	44.35	27.57
CDY29231	Canola	cytosol	44.35	27.57
CDY25962	Canola	mitochondrion	65.22	27.08
CDY13039	Canola	cytosol	44.35	20.82
CDY38908	Canola	cytosol	33.04	18.54
CDY31913	Canola	cytosol	32.17	17.96
CDY00519	Canola	cytosol	32.17	17.96
CDY32591	Canola	cytosol	33.04	15.02

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CIE9	EnsemblPlants:CDX75849	ProteinID:CDX75849	ProteinID:CDX75849.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	EnsemblPlantsGene:GSBRNA2T00123821001	InterPro:IPR024156	InterPro:P-loop_NTPase	PFAM:PF00025	PFscan:PS51417
PANTHER:PTHR11711	PANTHER:PTHR11711:SF215	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
UniParc:UPI0004EDF240	:	:	:	:	:

Description

BnaC03g39320D

Coordinates

chrLK031805:-:1146647..1148024

Molecular Weight (calculated)

13314.3 Da

IEP (calculated)

10.015

GRAVY (calculated)

-0.244

Length

115 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG ENVTTIPTIG FNDKIRPLWR HYFQNTQGLI FVVDSNDRDR VVEARDELHR ILNEDELRDA
101: VLLVFAKSSQ RNERC

Best Arabidopsis Sequence Match ( AT2G47170.1 )
(BLAST)

001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.