CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 3
peroxisome 1
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27506	Canola	cytosol	100.0	100.0
CDY37791	Canola	cytosol	100.0	100.0
CDX89139	Canola	cytosol	100.0	100.0
CDX80083	Canola	cytosol	100.0	100.0
Bra027153.1-P	Field mustard	cytosol	99.45	99.45
CDX93979	Canola	mitochondrion, peroxisome	99.45	99.45
CDY53050	Canola	cytosol	99.45	99.45
CDY47137	Canola	peroxisome	98.89	98.89
CDY41444	Canola	mitochondrion	98.89	98.89
CDY47221	Canola	mitochondrion	98.89	98.89
CDX91717	Canola	mitochondrion	98.89	98.89
CDY44152	Canola	mitochondrion, peroxisome	98.34	98.34
CDY54291	Canola	mitochondrion, peroxisome	98.34	98.34
CDY03747	Canola	mitochondrion, peroxisome	98.34	98.34
CDY04706	Canola	mitochondrion, peroxisome	98.34	98.34
CDY09441	Canola	mitochondrion, peroxisome	98.34	98.34
CDY11588	Canola	mitochondrion, peroxisome	98.34	98.34
CDY25787	Canola	mitochondrion, peroxisome	98.34	98.34
GSMUA_Achr5P07760_001	Banana	mitochondrion	97.79	97.79
CDX95712	Canola	cytosol	99.45	94.74
CDX83340	Canola	cytosol	98.89	93.72
CDX68343	Canola	cytosol	91.16	90.66
CDX75849	Canola	cytosol	56.91	89.57
CDX69567	Canola	mitochondrion	97.79	85.92
CDY09875	Canola	mitochondrion	97.79	83.1
CDY23500	Canola	cytosol	90.61	76.64
CDX68781	Canola	cytosol	60.22	59.89
CDX75192	Canola	cytosol	60.22	59.89
CDY45596	Canola	cytosol	59.67	59.34
CDY34756	Canola	cytosol	59.67	59.34
CDX76793	Canola	cytosol	59.67	59.34
CDY36172	Canola	cytosol	57.46	57.14
CDY48224	Canola	mitochondrion	64.09	56.59
CDX71216	Canola	mitochondrion	64.09	55.5
CDY16963	Canola	cytosol	58.56	55.21
CDX69406	Canola	cytosol	58.56	55.21
CDY43149	Canola	cytosol	58.56	55.21
CDY28739	Canola	cytosol	58.56	55.21
CDY23463	Canola	cytosol	58.56	55.21
CDY53727	Canola	cytosol	53.04	52.46
CDY36874	Canola	cytosol	52.49	51.91
CDY29751	Canola	cytosol	52.49	51.91
CDY16265	Canola	cytosol	52.49	51.91
CDY36479	Canola	cytosol	48.07	47.03
CDY29231	Canola	cytosol	48.07	47.03
CDY13039	Canola	cytosol	48.07	35.51
CDY25962	Canola	mitochondrion	52.49	34.3
CDY31913	Canola	cytosol	35.36	31.07
CDY38908	Canola	cytosol	34.81	30.73
CDY00519	Canola	cytosol	34.81	30.58
CDY32591	Canola	cytosol	34.81	24.9

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:A0A078GQB8	UniProt:A0A078GQB8	ProteinID:CDY27506.1	ProteinID:CDY37791.1
EnsemblPlants:CDY51415	ProteinID:CDY51415	ProteinID:CDY51415.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00003349001	InterPro:IPR024156	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
TIGRFAMs:TIGR00231	UniParc:UPI00000A4A38	:	:	:	:

Description

BnaA04g26920DBnaA04g00470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQB8]

Coordinates

chrLK032993:+:8698..10381

Molecular Weight (calculated)

20608.8 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.217

Length

181 amino acids

Sequence
(BLAST)

001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT3G62290.2 )
(BLAST)

Arabidopsis Description

ARFA1EADP-ribosylation factor A1E [Source:UniProtKB/TrEMBL;Acc:Q9M1P5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.