Factsheet for GSMUA_Achr5P07760_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62290.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32180_001	Banana	cytosol	74.59	99.26
CDY47221	Canola	mitochondrion	98.89	98.89
GSMUA_Achr3P09430_001	Banana	cytosol	87.29	98.75
GSMUA_Achr9P17120_001	Banana	cytosol	87.29	98.75
Bra027153.1-P	Field mustard	cytosol	98.34	98.34
CDY53050	Canola	cytosol	98.34	98.34
CDX93979	Canola	mitochondrion, peroxisome	98.34	98.34
AT3G62290.1	Thale cress	cytosol	97.79	97.79
GSMUA_Achr2P11590_001	Banana	mitochondrion	97.79	97.79
Solyc01g100860.2.1	Tomato	unclear	97.79	97.79
CDY51415	Canola	cytosol	97.79	97.79
CDY37791	Canola	cytosol	97.79	97.79
CDY27506	Canola	cytosol	97.79	97.79
CDX89139	Canola	cytosol	97.79	97.79
CDX80083	Canola	cytosol	97.79	97.79
Bra004475.1-P	Field mustard	cytosol	97.79	97.79
GSMUA_Achr9P05130_001	Banana	mitochondrion	97.24	97.24
Bra014403.1-P	Field mustard	cytosol	97.24	97.24
GSMUA_Achr10P...	Banana	cytosol	85.64	96.88
Bra021387.1-P	Field mustard	cytosol	96.69	96.69
Zm00001d043113_P001	Maize	plastid	97.24	96.17
GSMUA_Achr4P10250_001	Banana	mitochondrion	95.58	95.58
GSMUA_Achr4P02310_001	Banana	mitochondrion	95.03	95.03
GSMUA_Achr7P18350_001	Banana	cytosol	86.19	93.98
GSMUA_Achr10P...	Banana	cytosol	85.64	93.37
CDX95712	Canola	cytosol	97.24	92.63
CDX83340	Canola	cytosol	96.69	91.62
Bra000443.1-P	Field mustard	cytosol	96.13	90.62
GSMUA_Achr11P...	Banana	cytosol	96.13	87.0
GSMUA_Achr3P18390_001	Banana	plasma membrane	96.69	72.31
OQU87737	Sorghum	cytosol	97.24	66.42
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	61.33	60.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	61.33	60.99
GSMUA_AchrUn_...	Banana	cytosol	58.56	56.99
GSMUA_Achr7P04780_001	Banana	cytosol	58.56	56.38
GSMUA_Achr5P03700_001	Banana	cytosol	59.67	55.67
GSMUA_Achr6P08570_001	Banana	cytosol	97.24	54.83
GSMUA_Achr4P27450_001	Banana	cytosol	58.56	54.64
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	54.14	53.55
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	53.59	53.01
GSMUA_Achr9P26270_001	Banana	cytosol	47.51	46.49
GSMUA_Achr5P00190_001	Banana	extracellular	35.36	31.53
GSMUA_Achr11P...	Banana	endoplasmic reticulum	33.7	30.05

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G07760_001	EnsemblPlants:GSMUA_Achr5P07760_001	EnsemblPlants:GSMUA_Achr5T07760_001	InterPro:IPR024156
UniProt:M0SWK5	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00029499DD	:	:

Description

ADP-ribosylation factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07760_001]

Coordinates

chr5:-:5567980..5571642

Molecular Weight (calculated)

20678.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.207

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TTGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.