Factsheet for GSMUA_Achr3P18390_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 3
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32180_001	Banana	cytosol	55.37	98.53
AT1G10630.2	Thale cress	mitochondrion	73.55	98.34
GSMUA_Achr9P17120_001	Banana	cytosol	64.88	98.12
AT1G23490.1	Thale cress	mitochondrion, peroxisome	73.14	97.79
GSMUA_Achr2P11590_001	Banana	mitochondrion	73.14	97.79
KRG93262	Soybean	nucleus	73.14	97.79
CDY54291	Canola	mitochondrion, peroxisome	73.14	97.79
CDY44152	Canola	mitochondrion, peroxisome	73.14	97.79
CDY25787	Canola	mitochondrion, peroxisome	73.14	97.79
KRH56584	Soybean	mitochondrion	73.14	97.79
CDY11588	Canola	mitochondrion, peroxisome	73.14	97.79
CDY09441	Canola	mitochondrion, peroxisome	73.14	97.79
CDY03747	Canola	mitochondrion, peroxisome	73.14	97.79
CDY04706	Canola	mitochondrion, peroxisome	73.14	97.79
AT2G47170.2	Thale cress	mitochondrion	73.14	97.79
AT1G70490.4	Thale cress	mitochondrion, peroxisome	73.14	97.79
GSMUA_Achr10P...	Banana	cytosol	64.46	97.5
CDX91717	Canola	mitochondrion	72.73	97.24
PGSC0003DMT400003226	Potato	mitochondrion	72.73	97.24
CDY41444	Canola	mitochondrion	72.73	97.24
Bra024604.1-P	Field mustard	mitochondrion	72.73	97.24
CDY47137	Canola	peroxisome	72.73	97.24
Bra016344.1-P	Field mustard	mitochondrion	72.73	97.24
GSMUA_Achr9P05130_001	Banana	mitochondrion	72.73	97.24
GSMUA_Achr3P09430_001	Banana	cytosol	64.05	96.88
GSMUA_Achr5P07760_001	Banana	mitochondrion	72.31	96.69
GSMUA_Achr10P...	Banana	cytosol	65.7	95.78
VIT_14s0066g01080.t01	Wine grape	mitochondrion	71.49	95.58
GSMUA_Achr4P10250_001	Banana	mitochondrion	71.49	95.58
GSMUA_Achr7P18350_001	Banana	cytosol	65.29	95.18
Zm00001d005231_P006	Maize	cytosol	73.14	95.16
Bra012376.1-P	Field mustard	cytosol	73.55	94.68
GSMUA_Achr4P02310_001	Banana	mitochondrion	70.66	94.48
CDX68343	Canola	cytosol	69.42	92.31
KRH36902	Soybean	endoplasmic reticulum	69.83	91.85
Bra003954.1-P	Field mustard	cytosol	68.18	91.16
GSMUA_Achr11P...	Banana	cytosol	73.97	89.5
TraesCS5B01G479100.1	Wheat	golgi	73.55	84.36
CDY23500	Canola	cytosol	67.77	76.64
HORVU5Hr1G111500.2	Barley	mitochondrion	72.31	74.79
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	45.87	60.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	45.45	60.44
GSMUA_Achr6P08570_001	Banana	cytosol	76.45	57.63
GSMUA_Achr7P04780_001	Banana	cytosol	44.63	57.45
GSMUA_Achr5P03700_001	Banana	cytosol	45.87	57.22
GSMUA_AchrUn_...	Banana	cytosol	43.8	56.99
GSMUA_Achr4P27450_001	Banana	cytosol	45.45	56.7
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	41.32	54.64
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	40.91	54.1
GSMUA_Achr9P26270_001	Banana	cytosol	35.95	47.03
GSMUA_Achr5P00190_001	Banana	extracellular	26.86	32.02
GSMUA_Achr11P...	Banana	endoplasmic reticulum	25.21	30.05

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G18390_001	EnsemblPlants:GSMUA_Achr3P18390_001	EnsemblPlants:GSMUA_Achr3T18390_001	InterPro:IPR024156
UniProt:M0SFQ5	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711
PANTHER:PTHR11711:SF215	SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0002949B2B	SEG:seg	:

Description

ADP-ribosylation factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18390_001]

Coordinates

chr3:-:19846232..19850459

Molecular Weight (calculated)

27549.3 Da

IEP (calculated)

10.024

GRAVY (calculated)

-0.231

Length

242 amino acids

Sequence
(BLAST)

001: MCIYRTVTNL KSVILTAVTS ISWQPRDVKA KKRSTLAPRF GSRRLHDLER KGTMGLSFAK LFSRLFAKKE MRILMVGLDA AGKTTILYKL KLGEIVTTIP
101: TIGFNVETVE YKNISFTVWD VGGQDKIRPL WRHYFQNTQG LIFVVDSNDR DRIVEARDEL HRMLNEDELR DAVLLVFANK QDLPNAMNAA EITDKLGLHS
201: LRQRHWYIQS TCATSGEGLY EGLDWLSSNI ASKVTTTTTT FS

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.