Factsheet for PGSC0003DMT400003226

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56584	Soybean	mitochondrion	99.45	99.45
KRG93262	Soybean	nucleus	99.45	99.45
AT1G10630.2	Thale cress	mitochondrion	98.89	98.89
AT2G47170.2	Thale cress	mitochondrion	98.89	98.89
AT1G23490.1	Thale cress	mitochondrion, peroxisome	98.34	98.34
PGSC0003DMT400035158	Potato	mitochondrion	98.34	98.34
GSMUA_Achr2P11590_001	Banana	mitochondrion	98.34	98.34
CDY54291	Canola	mitochondrion, peroxisome	98.34	98.34
CDY44152	Canola	mitochondrion, peroxisome	98.34	98.34
CDY41444	Canola	mitochondrion	98.34	98.34
CDY25787	Canola	mitochondrion, peroxisome	98.34	98.34
CDY11588	Canola	mitochondrion, peroxisome	98.34	98.34
CDY04706	Canola	mitochondrion, peroxisome	98.34	98.34
CDY09441	Canola	mitochondrion, peroxisome	98.34	98.34
CDY03747	Canola	mitochondrion, peroxisome	98.34	98.34
CDX91717	Canola	mitochondrion	98.34	98.34
AT1G70490.4	Thale cress	mitochondrion, peroxisome	98.34	98.34
Bra016344.1-P	Field mustard	mitochondrion	98.34	98.34
Os03t0811900-01	Rice	plasma membrane	97.79	97.79
PGSC0003DMT400042276	Potato	mitochondrion	97.79	97.79
PGSC0003DMT400065739	Potato	mitochondrion	97.79	97.79
TraesCS2A01G235500.1	Wheat	golgi, plastid	97.79	97.79
Bra024604.1-P	Field mustard	mitochondrion	97.79	97.79
CDY47137	Canola	peroxisome	97.79	97.79
TraesCS2D01G244900.1	Wheat	mitochondrion, peroxisome	97.24	97.24
EER96075	Sorghum	mitochondrion	97.24	97.24
EER93218	Sorghum	mitochondrion	97.24	97.24
VIT_14s0066g01080.t01	Wine grape	mitochondrion	97.24	97.24
Os07t0223400-01	Rice	mitochondrion	97.24	97.24
Os07t0223100-01	Rice	plasma membrane	97.24	97.24
Zm00001d023657_P001	Maize	cytosol	24.86	95.74
GSMUA_Achr7P18350_001	Banana	cytosol	86.74	94.58
Bra012376.1-P	Field mustard	cytosol	97.79	94.15
Zm00001d005231_P006	Maize	cytosol	96.69	94.09
GSMUA_Achr10P...	Banana	cytosol	86.19	93.98
KRH36902	Soybean	endoplasmic reticulum	94.48	92.93
Bra003954.1-P	Field mustard	cytosol	90.61	90.61
PGSC0003DMT400011952	Potato	golgi	90.06	90.56
CDX68343	Canola	cytosol	90.61	90.11
Zm00001d019191_P007	Maize	peroxisome	97.24	88.44
GSMUA_Achr11P...	Banana	cytosol	97.24	88.0
PGSC0003DMT400064241	Potato	cytosol	87.85	87.85
PGSC0003DMT400075807	Potato	cytosol	87.85	87.85
Zm00001d013007_P001	Maize	plastid	96.69	86.21
PGSC0003DMT400064240	Potato	cytosol	80.11	85.29
TraesCS5D01G480200.1	Wheat	unclear	97.24	83.41
TraesCS5A01G467400.1	Wheat	cytosol	97.24	83.41
TraesCS5B01G479100.1	Wheat	golgi	96.69	82.94
CDY23500	Canola	cytosol	90.06	76.17
HORVU5Hr1G111500.2	Barley	mitochondrion	96.69	74.79
GSMUA_Achr3P18390_001	Banana	plasma membrane	97.24	72.73
Zm00001d012537_P003	Maize	cytosol	76.8	68.47
GSMUA_Achr6P08570_001	Banana	cytosol	97.79	55.14
PGSC0003DMT400069538	Potato	cytosol	58.56	54.92
PGSC0003DMT400001454	Potato	cytosol	58.01	54.4
PGSC0003DMT400034971	Potato	cytosol	52.49	51.91
PGSC0003DMT400043258	Potato	cytosol	27.62	50.51
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	58.01	41.34
PGSC0003DMT400043326	Potato	cytosol	30.39	23.21

Protein Annotations

EntrezGene:102577686	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:ABB16972	ProteinID:ABB16972.1	ProteinID:ABB16982
ProteinID:ABB16982.1	ProteinID:ABB87122	ProteinID:ABB87122.1	EMBL:DQ228323	EMBL:DQ228333	EMBL:DQ241851
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
InterPro:IPR024156	RefSeq:NP_001274832.1	InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400001272	PGSC:PGSC0003DMG400001272
EnsemblPlants:PGSC0003DMT400003226	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	UniProt:Q38HU6
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI00005D3B4C	:	:	:

Description

ADP-ribosylation factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001272]

Coordinates

chr1:-:34910222..34916520

Molecular Weight (calculated)

20667.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.207

Length

181 amino acids

Sequence
(BLAST)

001: MGLSFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELREAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.