Factsheet for PGSC0003DMT400011952

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 6
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003226	Potato	mitochondrion	90.56	90.06
PGSC0003DMT400035158	Potato	mitochondrion	90.0	89.5
PGSC0003DMT400042276	Potato	mitochondrion	89.44	88.95
PGSC0003DMT400065739	Potato	mitochondrion	89.44	88.95
PGSC0003DMT400064241	Potato	cytosol	81.67	81.22
PGSC0003DMT400075807	Potato	cytosol	81.67	81.22
PGSC0003DMT400064240	Potato	cytosol	74.44	78.82
PGSC0003DMT400001454	Potato	cytosol	56.67	52.85
PGSC0003DMT400069538	Potato	cytosol	56.67	52.85
PGSC0003DMT400034971	Potato	cytosol	52.78	51.91
PGSC0003DMT400043258	Potato	cytosol	27.22	49.49
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	55.0	38.98
PGSC0003DMT400043326	Potato	cytosol	30.0	22.78

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:ABB86265	ProteinID:ABB86265.1	EMBL:DQ284477	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
UniProt:M1A0F7	InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400004691	PGSC:PGSC0003DMG400004691	EnsemblPlants:PGSC0003DMT400011952
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000294D754

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004691]

Coordinates

chr12:-:59857202..59860140

Molecular Weight (calculated)

20628.9 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.178

Length

180 amino acids

Sequence
(BLAST)

001: MGLCFTKLII CLFAKKEMRI LMVGLDDAGK TTILYKLKLG EIVTAIRTSG FNVETVEYKN IIFTVWDVGG QDRIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: GEARDELHRM LYEDELREAV LLVFANKQDL PNAMNAAEIT DKLGLHSLHS LQQRHWHIQS TCATSGEGLY EGLDWLSNKA

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.