Factsheet for PGSC0003DMT400034971

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005300.2.1	Tomato	cytosol	99.45	99.45
KRG92448	Soybean	endoplasmic reticulum	89.07	89.07
KRH34351	Soybean	endoplasmic reticulum	88.52	88.52
AT3G22950.1	Thale cress	cytosol	88.52	88.52
KRG92441	Soybean	endoplasmic reticulum	87.98	87.98
VIT_05s0020g04460.t01	Wine grape	cytosol	57.38	87.5
Bra039725.1-P	Field mustard	cytosol	87.43	87.43
CDY36874	Canola	cytosol	87.43	87.43
CDY53727	Canola	cytosol	87.43	87.43
CDY16265	Canola	cytosol	86.89	86.89
Bra036878.1-P	Field mustard	cytosol	86.34	86.34
CDY29751	Canola	cytosol	86.34	86.34
GSMUA_Achr4P01270_001	Banana	endoplasmic reticulum	84.15	84.15
Os11t0586900-02	Rice	cytosol	83.61	83.15
GSMUA_Achr1P04710_001	Banana	endoplasmic reticulum, extracellular	83.06	83.06
KRH34356	Soybean	cytosol, extracellular	61.75	81.3
Zm00001d052978_P001	Maize	extracellular	81.42	80.98
EES08754	Sorghum	cytosol, mitochondrion	81.42	80.98
TraesCS4D01G152600.1	Wheat	cytosol	80.87	80.43
HORVU4Hr1G038090.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.33	79.89
TraesCS4B01G164400.1	Wheat	endoplasmic reticulum	80.33	79.89
TraesCS4A01G149200.1	Wheat	cytosol	80.33	79.89
PGSC0003DMT400064241	Potato	cytosol	53.01	53.59
PGSC0003DMT400075807	Potato	cytosol	53.01	53.59
PGSC0003DMT400064240	Potato	cytosol	49.18	52.94
PGSC0003DMT400011952	Potato	golgi	51.91	52.78
PGSC0003DMT400065739	Potato	mitochondrion	51.91	52.49
PGSC0003DMT400042276	Potato	mitochondrion	51.91	52.49
PGSC0003DMT400035158	Potato	mitochondrion	51.91	52.49
PGSC0003DMT400003226	Potato	mitochondrion	51.91	52.49
PGSC0003DMT400069538	Potato	cytosol	48.09	45.6
PGSC0003DMT400001454	Potato	cytosol	48.09	45.6
PGSC0003DMT400043258	Potato	cytosol	20.77	38.38
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	48.63	35.04
PGSC0003DMT400043326	Potato	cytosol	31.15	24.05

Protein Annotations

EntrezGene:102594033	MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	InterPro:IPR024156
UniProt:M1B1L3	InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400013442	PGSC:PGSC0003DMG400013442	EnsemblPlants:PGSC0003DMT400034971
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF290	SMART:SM00175	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI000295E5C2	RefSeq:XP_006356045.1	:	:	:	:

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013442]

Coordinates

chr3:-:352477..357676

Molecular Weight (calculated)

20557.7 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.127

Length

183 amino acids

Sequence
(BLAST)

001: MGGFVSRFWF MMFPAKEYKI IVVGLDNAGK TTTLYKLHLG EVVTTNPTVG SNVEELVYKN IRFEVWDLGG QERLRTSWAT YYRGTHAVIV VIDSSDRARI
101: STMKDELFRL LPHEELQNAV VLVFANKQDL KDAMTPAEIT DALSLHSIKN HDWHIQACSA LTGDGLYDGL GWIAQKVPGK TPT

Best Arabidopsis Sequence Match ( AT3G22950.1 )
(BLAST)

001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS

Arabidopsis Description

ATARFC1ADP-ribosylation factor C1 [Source:UniProtKB/TrEMBL;Acc:Q9LIK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.