Factsheet for PGSC0003DMT400035158

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69574	Soybean	endoplasmic reticulum, nucleus	100.0	100.0
Solyc05g005190.2.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400065739	Potato	mitochondrion	99.45	99.45
TraesCS3B01G368600.1	Wheat	mitochondrion	99.45	99.45
Os05t0489600-03	Rice	plasma membrane	99.45	99.45
EES19719	Sorghum	mitochondrion	99.45	99.45
PGSC0003DMT400042276	Potato	mitochondrion	99.45	99.45
Os01t0813400-01	Rice	plasma membrane	98.89	98.89
TraesCS3A01G337300.1	Wheat	mitochondrion	98.89	98.35
PGSC0003DMT400003226	Potato	mitochondrion	98.34	98.34
TraesCS1B01G317000.1	Wheat	mitochondrion	98.89	97.28
Zm00001d038533_P001	Maize	plastid	98.89	97.28
TraesCS1A01G306200.1	Wheat	mitochondrion	98.89	96.24
PGSC0003DMT400011952	Potato	golgi	89.5	90.0
PGSC0003DMT400075807	Potato	cytosol	87.29	87.29
PGSC0003DMT400064241	Potato	cytosol	87.29	87.29
PGSC0003DMT400064240	Potato	cytosol	80.11	85.29
HORVU1Hr1G068790.1	Barley	plastid	99.45	76.27
TraesCS3D01G330500.1	Wheat	cytosol	98.89	71.31
HORVU0Hr1G027130.1	Barley	plasma membrane	99.45	70.87
TraesCS1D01G305900.1	Wheat	golgi	99.45	68.44
VIT_07s0005g02000.t01	Wine grape	cytosol	99.45	65.69
HORVU3Hr1G079700.1	Barley	cytosol	99.45	57.88
PGSC0003DMT400069538	Potato	cytosol	58.56	54.92
PGSC0003DMT400001454	Potato	cytosol	58.01	54.4
PGSC0003DMT400034971	Potato	cytosol	52.49	51.91
PGSC0003DMT400043258	Potato	cytosol	27.62	50.51
PGSC0003DMT400070636	Potato	cytosol, mitochondrion	58.01	41.34
PGSC0003DMT400043326	Potato	cytosol	30.39	23.21

Protein Annotations

EntrezGene:102586978	MapMan:22.3.2.1	Gene3D:3.40.50.300	ProteinID:ABA40455	ProteinID:ABA40455.1	ProteinID:ABC01907
ProteinID:ABC01907.1	ProteinID:CAA52468	ProteinID:CAA52468.1	EMBL:DQ191654	EMBL:DQ294275	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016192	InterPro:IPR024156	UniProt:M1B1W6
InterPro:P-loop_NTPase	PFAM:PF00025	EnsemblPlantsGene:PGSC0003DMG400013514	PGSC:PGSC0003DMG400013514	EnsemblPlants:PGSC0003DMT400035158	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000188B74E
EMBL:X74461	RefSeq:XP_006356427.1	:	:	:	:

Description

ADP-ribosylation factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013514]

Coordinates

chr5:-:8869309..8872830

Molecular Weight (calculated)

20694.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.222

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT5G14670.3 )
(BLAST)

001: MGLNFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIATK A

Arabidopsis Description

ATARFA1BADP-ribosylation factor A1B [Source:UniProtKB/TrEMBL;Acc:Q9LYJ3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.