CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
peroxisome 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45651	Soybean	mitochondrion	100.0	100.0
PGSC0003DMT400035158	Potato	mitochondrion	100.0	100.0
Solyc05g005190.2.1	Tomato	nucleus	100.0	100.0
KRG99354	Soybean	mitochondrion	100.0	100.0
EES19719	Sorghum	mitochondrion	99.45	99.45
Os05t0489600-03	Rice	plasma membrane	99.45	99.45
KRG96566	Soybean	mitochondrion	99.45	99.45
TraesCS3B01G368600.1	Wheat	mitochondrion	99.45	99.45
KRG90489	Soybean	mitochondrion	99.45	99.45
Os01t0813400-01	Rice	plasma membrane	98.89	98.89
KRH56584	Soybean	mitochondrion	98.89	98.89
KRH33780	Soybean	mitochondrion, peroxisome	98.89	98.89
KRG93262	Soybean	nucleus	98.89	98.89
TraesCS3A01G337300.1	Wheat	mitochondrion	98.89	98.35
Zm00001d038533_P001	Maize	plastid	98.89	97.28
TraesCS1B01G317000.1	Wheat	mitochondrion	98.89	97.28
KRH31758	Soybean	mitochondrion	98.89	97.28
TraesCS1A01G306200.1	Wheat	mitochondrion	98.89	96.24
KRH74584	Soybean	nucleus	99.45	94.74
KRH36902	Soybean	endoplasmic reticulum	94.48	92.93
KRH77051	Soybean	mitochondrion	85.08	84.62
KRH69176	Soybean	endoplasmic reticulum	98.89	80.27
HORVU1Hr1G068790.1	Barley	plastid	99.45	76.27
TraesCS3D01G330500.1	Wheat	cytosol	98.89	71.31
HORVU0Hr1G027130.1	Barley	plasma membrane	99.45	70.87
TraesCS1D01G305900.1	Wheat	golgi	99.45	68.44
VIT_07s0005g02000.t01	Wine grape	cytosol	99.45	65.69
KRH07000	Soybean	extracellular, golgi	43.65	65.29
KRH18982	Soybean	endoplasmic reticulum	60.77	63.95
KRH02913	Soybean	cytosol	55.8	60.84
HORVU3Hr1G079700.1	Barley	cytosol	99.45	57.88
KRH77702	Soybean	cytosol	54.14	55.68
KRH27742	Soybean	cytosol	58.56	54.92
KRH24049	Soybean	cytosol	59.12	54.87
KRH29023	Soybean	cytosol	59.12	54.87
KRG92448	Soybean	endoplasmic reticulum	53.59	53.01
KRG92441	Soybean	endoplasmic reticulum	53.59	53.01
KRH34351	Soybean	endoplasmic reticulum	53.59	53.01
KRH34356	Soybean	cytosol, extracellular	38.12	49.64
KRH28677	Soybean	cytosol	47.51	46.49
KRH76824	Soybean	cytosol	47.51	46.49
KRH20906	Soybean	endoplasmic reticulum	37.57	33.33
KRH11380	Soybean	endoplasmic reticulum	37.57	33.33

Protein Annotations

EntrezGene:100306021	EntrezGene:100796123	EntrezGene:100807631	EntrezGene:100808042	MapMan:22.3.2.1	Gene3D:3.40.50.300
EMBL:ACUP02000049	EMBL:ACUP02000721	EMBL:ACUP02005275	EMBL:ACUP02011039	EMBL:BT089921	EMBL:BT097982
UniProt:C6SXM4	EnsemblPlantsGene:GLYMA_02G035600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	ProteinID:KRG99353.1	ProteinID:KRG99354.1	ProteinID:KRH45651.1
EnsemblPlants:KRH69574	ProteinID:KRH69574	ProteinID:KRH69574.1	ProteinID:KRH69575.1	ProteinID:KRH74582.1	ProteinID:KRH74583.1
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182
SMART:SM00175	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF
InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI000188B74E	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:3290607..3293855

Molecular Weight (calculated)

20694.9 Da

IEP (calculated)

6.960

GRAVY (calculated)

-0.222

Length

181 amino acids

Sequence
(BLAST)

001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.