CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
endoplasmic reticulum 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45651	Soybean	mitochondrion	84.62	85.08
KRG99354	Soybean	mitochondrion	84.62	85.08
KRH69574	Soybean	endoplasmic reticulum, nucleus	84.62	85.08
KRG90489	Soybean	mitochondrion	84.07	84.53
KRG96566	Soybean	mitochondrion	84.07	84.53
KRH33780	Soybean	mitochondrion, peroxisome	83.52	83.98
KRH56584	Soybean	mitochondrion	83.52	83.98
KRG93262	Soybean	nucleus	83.52	83.98
KRH31758	Soybean	mitochondrion	84.07	83.15
KRH74584	Soybean	nucleus	84.62	81.05
KRH36902	Soybean	endoplasmic reticulum	81.87	80.98
KRH07000	Soybean	extracellular, golgi	49.45	74.38
VIT_07s0129g01090.t01	Wine grape	mitochondrion	79.67	73.23
KRH69176	Soybean	endoplasmic reticulum	84.07	68.61
KRH18982	Soybean	endoplasmic reticulum	54.95	58.14
KRH77702	Soybean	cytosol	54.4	56.25
KRH29023	Soybean	cytosol	58.24	54.36
KRH24049	Soybean	cytosol	58.24	54.36
KRH02913	Soybean	cytosol	49.45	54.22
KRH27742	Soybean	cytosol	57.14	53.89
KRH34351	Soybean	endoplasmic reticulum	51.1	50.82
KRG92448	Soybean	endoplasmic reticulum	51.1	50.82
KRG92441	Soybean	endoplasmic reticulum	51.1	50.82
KRH34356	Soybean	cytosol, extracellular	37.36	48.92
KRH28677	Soybean	cytosol	44.51	43.78
KRH76824	Soybean	cytosol	44.51	43.78
KRH20906	Soybean	endoplasmic reticulum	35.16	31.37
KRH11380	Soybean	endoplasmic reticulum	35.16	31.37

Protein Annotations

EntrezGene:100305887	MapMan:22.3.2.1	Gene3D:3.40.50.300	EMBL:ACUP02000654	EMBL:BT089709	UniProt:C6SX15
EnsemblPlantsGene:GLYMA_01G189800	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	EnsemblPlants:KRH77051	ProteinID:KRH77051	ProteinID:KRH77051.1	ProteinID:KRH77052.1
ProteinID:KRH77053.1	ProteinID:KRH77054.1	ProteinID:KRH77055.1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0001B1515F

Description

hypothetical protein

Coordinates

chr1:-:52471597..52474057

Molecular Weight (calculated)

20928.4 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.198

Length

182 amino acids

Sequence
(BLAST)

001: MGLTVSRLLR LFYARKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN VSFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRERI
101: LEARDELHRM LSEDELRDAT VLVFANKQDL PNALSVAEIT DKLGLHSLRL RRWYIQPTCA TSGQGLYEGL DWLSSHITNK TR

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.