CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29023	Soybean	cytosol	99.49	99.49
KRH27742	Soybean	cytosol	91.79	92.75
Solyc06g072800.2.1	Tomato	cytosol	62.05	91.67
KRH77702	Soybean	cytosol	82.56	91.48
Solyc03g096910.2.1	Tomato	cytosol	61.54	90.91
AT5G17060.2	Thale cress	cytosol	88.72	90.1
VIT_16s0039g02240.t01	Wine grape	cytosol	88.72	89.64
AT3G03120.1	Thale cress	cytosol	88.21	89.58
PGSC0003DMT400069538	Potato	cytosol	88.21	89.12
PGSC0003DMT400001454	Potato	cytosol	88.21	89.12
CDY23463	Canola	cytosol	87.69	89.06
CDY28739	Canola	cytosol	87.69	89.06
CDY43149	Canola	cytosol	87.69	89.06
Bra021371.1-P	Field mustard	cytosol	87.69	89.06
CDY16963	Canola	cytosol	87.69	89.06
CDX69406	Canola	cytosol	87.69	89.06
Bra032015.1-P	Field mustard	cytosol	87.69	89.06
Bra008579.1-P	Field mustard	cytosol	87.18	88.54
TraesCS6A01G268000.1	Wheat	cytosol	84.1	85.86
TraesCS6D01G246900.1	Wheat	cytosol	83.59	85.34
EES07411	Sorghum	cytosol	83.08	83.51
GSMUA_AchrUn_...	Banana	cytosol	79.49	83.33
Zm00001d051546_P001	Maize	cytosol	82.05	82.47
GSMUA_Achr7P04780_001	Banana	cytosol	79.49	82.45
Os02t0699300-01	Rice	cytosol, extracellular, plastid	47.18	74.19
Zm00001d017717_P001	Maize	cytosol	82.05	72.4
KRG90489	Soybean	mitochondrion	54.87	59.12
KRG93262	Soybean	nucleus	54.87	59.12
KRG96566	Soybean	mitochondrion	54.87	59.12
KRH45651	Soybean	mitochondrion	54.87	59.12
KRH56584	Soybean	mitochondrion	54.87	59.12
KRG99354	Soybean	mitochondrion	54.87	59.12
KRH69574	Soybean	endoplasmic reticulum, nucleus	54.87	59.12
KRH31758	Soybean	mitochondrion	55.38	58.7
KRH36902	Soybean	endoplasmic reticulum	55.38	58.7
KRH33780	Soybean	mitochondrion, peroxisome	54.36	58.56
HORVU6Hr1G067840.2	Barley	cytosol	83.59	58.42
KRH77051	Soybean	mitochondrion	54.36	58.24
KRH74584	Soybean	nucleus	56.41	57.89
TraesCS6B01G295200.1	Wheat	plastid	72.82	57.72
KRH02913	Soybean	cytosol	48.21	56.63
KRH18982	Soybean	endoplasmic reticulum	48.72	55.23
KRH07000	Soybean	extracellular, golgi	31.79	51.24
KRH69176	Soybean	endoplasmic reticulum	55.38	48.43
KRH34351	Soybean	endoplasmic reticulum	45.13	48.09
KRG92448	Soybean	endoplasmic reticulum	45.13	48.09
KRG92441	Soybean	endoplasmic reticulum	45.13	48.09
KRH34356	Soybean	cytosol, extracellular	32.31	45.32
KRH76824	Soybean	cytosol	39.49	41.62
KRH28677	Soybean	cytosol	39.49	41.62
KRH11380	Soybean	endoplasmic reticulum	31.28	29.9
KRH20906	Soybean	endoplasmic reticulum	31.28	29.9

Protein Annotations

EntrezGene:100816276	MapMan:22.3.2.1	Gene3D:3.40.50.300	EMBL:ACUP02007166	EMBL:BT098121	UniProt:C6TKB5
EnsemblPlantsGene:GLYMA_12G018600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	InterPro:IPR024156	EnsemblPlants:KRH24049	ProteinID:KRH24049	ProteinID:KRH24049.1	InterPro:P-loop_NTPase
PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF300	SMART:SM00177
SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231
UniParc:UPI0001B16B2B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:1312778..1316534

Molecular Weight (calculated)

22034.7 Da

IEP (calculated)

9.047

GRAVY (calculated)

-0.110

Length

195 amino acids

Sequence
(BLAST)

001: MGQAFRKLFD TFFGNTEMRV VMLGLDAAGK TTILYKLHIG EVLSTVPTIG FNVEKVQYKN VVFTVWDVGG QEKLRALWRH YFNNTDGLIY VVDSLDRERI
101: GKAKQEFQTV INDPFMLHSI ILVFANKQDL KGAMSPREIC EGLGLFDLKN RKWHIQGTCA LRGDGLYEGL DWLSTTLKER RAAGYSSIGL GTSSF

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.