CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31758	Soybean	mitochondrion	82.51	100.0
KRG90489	Soybean	mitochondrion	80.72	99.45
KRG96566	Soybean	mitochondrion	80.72	99.45
PGSC0003DMT400065739	Potato	mitochondrion	80.27	98.89
KRG93262	Soybean	nucleus	80.27	98.89
KRG99354	Soybean	mitochondrion	80.27	98.89
KRH69574	Soybean	endoplasmic reticulum, nucleus	80.27	98.89
KRH56584	Soybean	mitochondrion	80.27	98.89
KRH45651	Soybean	mitochondrion	80.27	98.89
KRH33780	Soybean	mitochondrion, peroxisome	80.27	98.89
KRH74584	Soybean	nucleus	80.72	94.74
KRH36902	Soybean	endoplasmic reticulum	77.13	93.48
CDX69567	Canola	mitochondrion	80.27	86.89
Solyc01g008000.2.1	Tomato	plastid, unclear	80.27	85.65
KRH77051	Soybean	mitochondrion	68.61	84.07
CDY09875	Canola	mitochondrion	80.27	84.04
KRH07000	Soybean	extracellular, golgi	34.98	64.46
KRH18982	Soybean	endoplasmic reticulum	49.33	63.95
KRH02913	Soybean	cytosol	45.29	60.84
KRH77702	Soybean	cytosol	44.39	56.25
KRH27742	Soybean	cytosol	47.98	55.44
KRH29023	Soybean	cytosol	48.43	55.38
KRH24049	Soybean	cytosol	48.43	55.38
KRH34351	Soybean	endoplasmic reticulum	43.05	52.46
KRG92448	Soybean	endoplasmic reticulum	43.05	52.46
KRG92441	Soybean	endoplasmic reticulum	43.05	52.46
KRH34356	Soybean	cytosol, extracellular	30.94	49.64
KRH28677	Soybean	cytosol	39.01	47.03
KRH76824	Soybean	cytosol	39.01	47.03
KRH20906	Soybean	endoplasmic reticulum	30.49	33.33
KRH11380	Soybean	endoplasmic reticulum	30.49	33.33

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	UniProt:A0A0R0KXC5	EMBL:ACUP02000689	EnsemblPlantsGene:GLYMA_02G009600	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156
EnsemblPlants:KRH69176	ProteinID:KRH69176	ProteinID:KRH69176.1	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328
PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF182	SMART:SM00175	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	TIGRFAMs:TIGR00231	UniParc:UPI0006ED9BCC

Description

hypothetical protein

Coordinates

chr2:+:935548..938892

Molecular Weight (calculated)

25697.1 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.138

Length

223 amino acids

Sequence
(BLAST)

001: MTGSRWPACE TISISFLFVA KRRDLPPFFY QIYLFFKLKM GLSFTKLFSR LFAKKEMRIL MVGLDAAGKT TILYKLKLGE IVTTIPTIGF NVETVEYKNI
101: SFTVWDVGGQ DKIRPLWRHY FQNTQGLIFV VDSNDRDRVV EARDELHRML NEDELRDAVL LVFANKQDLP NAMNAAEITD KLGLHSLRQR HWYIQSTCAT
201: SGEGLYEGLD WLSNNIANKV SAE

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.