Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 5
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
unclear: 26455813 |
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065739 | Potato | mitochondrion | 85.65 | 98.89 |
| Solyc05g005190.2.1 | Tomato | nucleus | 85.65 | 98.89 |
| Solyc01g100860.2.1 | Tomato | unclear | 84.69 | 97.79 |
| KRH31758 | Soybean | mitochondrion | 85.65 | 97.28 |
| KRH74584 | Soybean | nucleus | 85.65 | 94.21 |
| CDX69567 | Canola | mitochondrion | 85.65 | 86.89 |
| CDY09875 | Canola | mitochondrion | 85.65 | 84.04 |
| Solyc02g092970.2.1 | Tomato | cytosol | 74.16 | 81.15 |
| KRH69176 | Soybean | endoplasmic reticulum | 85.65 | 80.27 |
| Solyc01g100870.2.1 | Tomato | plastid | 74.64 | 74.29 |
| Solyc06g072800.2.1 | Tomato | cytosol | 39.71 | 62.88 |
| Solyc03g096910.2.1 | Tomato | cytosol | 39.23 | 62.12 |
| Solyc07g006640.2.1 | Tomato | plastid | 52.15 | 59.89 |
| Solyc12g099080.1.1 | Tomato | unclear | 63.16 | 59.19 |
| Solyc04g025560.2.1 | Tomato | unclear | 66.99 | 55.34 |
| Solyc03g005300.2.1 | Tomato | cytosol | 45.45 | 51.91 |
| Solyc07g014650.2.1 | Tomato | cytosol | 38.28 | 47.34 |
| Solyc10g074630.1.1 | Tomato | cytosol | 28.23 | 30.57 |
Protein Annotations
| MapMan:22.3.2.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | InterPro:IPR024156 | UniProt:K4ASZ8 |
| InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF182 |
| SMART:SM00175 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF |
| InterPro:Small_GTPase_ARF/SAR | EnsemblPlantsGene:Solyc01g008000.2 | EnsemblPlants:Solyc01g008000.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI0002762CF5 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:2175122..2179207
Molecular Weight (calculated)
24164.3 Da
IEP (calculated)
8.081
GRAVY (calculated)
-0.180
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLTFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: GEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK TFSESVWLWH LLLRRSLLKR
201: FCNTMVECM
101: GEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK TFSESVWLWH LLLRRSLLKR
201: FCNTMVECM
001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
Arabidopsis Description
ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.