Factsheet for Solyc12g099080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 3
nucleus 2
cytosol 2
endoplasmic reticulum 2
golgi 2
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007917.1-P	Field mustard	cytosol	59.64	88.67
GSMUA_Achr9P17120_001	Banana	cytosol	57.4	80.0
Solyc05g005190.2.1	Tomato	nucleus	60.09	74.03
Solyc01g100860.2.1	Tomato	unclear	59.64	73.48
Solyc01g008000.2.1	Tomato	plastid, unclear	59.19	63.16
HORVU2Hr1G054780.5	Barley	cytosol	47.53	61.99
Solyc02g092970.2.1	Tomato	cytosol	52.91	61.78
Solyc01g100870.2.1	Tomato	plastid	50.22	53.33
Solyc04g025560.2.1	Tomato	unclear	60.09	52.96
Solyc07g006640.2.1	Tomato	plastid	35.87	43.96
Solyc06g072800.2.1	Tomato	cytosol	23.32	39.39
Solyc03g096910.2.1	Tomato	cytosol	22.87	38.64
Solyc03g005300.2.1	Tomato	cytosol	30.04	36.61
Solyc07g014650.2.1	Tomato	cytosol	27.35	36.09
Solyc10g074630.1.1	Tomato	cytosol	20.18	23.32

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	InterPro:IPR024156	UniProt:K4DHS9	InterPro:P-loop_NTPase	PFAM:PF00025
PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF225	SMART:SM00177	SMART:SM00178
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR	EnsemblPlantsGene:Solyc12g099080.1	EnsemblPlants:Solyc12g099080.1.1
TIGRFAMs:TIGR00231	UniParc:UPI000276A532	:	:	:	:

Description

No Description!

Coordinates

chr12:-:66355679..66359958

Molecular Weight (calculated)

25651.8 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.173

Length

223 amino acids

Sequence
(BLAST)

001: MTTQLKILFF RATAEESAVN DSSISRSTYS NLRSPIAVTQ RWGCLSPNFL VASLLRKKCV FLWLVSMLLV KPQFSTSSSW GKLLLLYLQL VRFNVETVEY
101: KNISFTVWDV GGQDKIRPLW RHYFQNTQGL IFVVDSNDRD RVVEARDELH RMLNEDELRE AVLLVFANKQ DLPNAMNAAE ITDKLGLHSL RQRHWYIQST
201: CATSGEGLYE GLDWLSNNIS NKA

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.