Factsheet for Solyc04g025560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 3
nucleus 1
extracellular 4
golgi 6
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007917.1-P	Field mustard	cytosol	51.78	87.33
GSMUA_Achr9P17120_001	Banana	cytosol	51.78	81.88
Solyc05g005190.2.1	Tomato	nucleus	55.73	77.9
Solyc01g100860.2.1	Tomato	unclear	54.94	76.8
Solyc01g008000.2.1	Tomato	plastid, unclear	55.34	66.99
Solyc02g092970.2.1	Tomato	cytosol	47.83	63.35
HORVU2Hr1G054780.5	Barley	cytosol	42.29	62.57
Solyc12g099080.1.1	Tomato	unclear	52.96	60.09
Solyc01g100870.2.1	Tomato	plastid	46.25	55.71
Solyc07g006640.2.1	Tomato	plastid	32.41	45.05
Solyc06g072800.2.1	Tomato	cytosol	22.53	43.18
Solyc03g096910.2.1	Tomato	cytosol	22.13	42.42
Solyc03g005300.2.1	Tomato	cytosol	27.67	38.25
Solyc07g014650.2.1	Tomato	cytosol	25.3	37.87
Solyc10g074630.1.1	Tomato	cytosol	18.58	24.35

Protein Annotations

MapMan:22.3.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024156	UniProt:K4BR01
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51417	PANTHER:PTHR11711	PANTHER:PTHR11711:SF225
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF	InterPro:Small_GTPase_ARF/SAR
EnsemblPlantsGene:Solyc04g025560.2	EnsemblPlants:Solyc04g025560.2.1	TIGRFAMs:TIGR00231	TMHMM:TMhelix	UniParc:UPI0002765A3C	SEG:seg

Description

No Description!

Coordinates

chr4:+:21891892..21896543

Molecular Weight (calculated)

29413.4 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.102

Length

253 amino acids

Sequence
(BLAST)

001: MKWQFSASHS LYLFPVIFFL LLLSQNLALI SGFTLSFFRS LFHNLLSGIT NKKEKWGCHS PSFSVGFSPR KKCEFSWLDL MQLVRPPYCT SSSWARSLLL
101: FLPLVRFNVE TVEYKNISFT VWDVGGQDKI RPLWRHYFQN TQGLIFVVDS NDRDRVVEAR DELHRMLNED ELRDVVLLVF ANKQDLPNAM NAAEITDKLG
201: LHSLRQRHWY IQSTCATSGE GLYEGLDWLS NNIANKAMEE FLRVDTGCRQ VFI

Best Arabidopsis Sequence Match ( AT1G10630.1 )
(BLAST)

001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A

Arabidopsis Description

ATARFA1FADP-ribosylation factor A1F [Source:UniProtKB/TrEMBL;Acc:Q6ID97]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.