Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 4
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
26371478
|
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g100860.2.1 | Tomato | unclear | 75.24 | 87.29 |
| Solyc05g005190.2.1 | Tomato | nucleus | 74.29 | 86.19 |
| GSMUA_Achr9P05130_001 | Banana | mitochondrion | 73.33 | 85.08 |
| Solyc01g008000.2.1 | Tomato | plastid, unclear | 74.29 | 74.64 |
| Solyc02g092970.2.1 | Tomato | cytosol | 65.71 | 72.25 |
| Solyc06g072800.2.1 | Tomato | cytosol | 39.05 | 62.12 |
| Solyc03g096910.2.1 | Tomato | cytosol | 38.57 | 61.36 |
| Solyc07g006640.2.1 | Tomato | plastid | 47.14 | 54.4 |
| Solyc12g099080.1.1 | Tomato | unclear | 53.33 | 50.22 |
| Solyc03g005300.2.1 | Tomato | cytosol | 40.95 | 46.99 |
| Solyc04g025560.2.1 | Tomato | unclear | 55.71 | 46.25 |
| Solyc07g014650.2.1 | Tomato | cytosol | 34.29 | 42.6 |
| Solyc10g074630.1.1 | Tomato | cytosol | 26.19 | 28.5 |
Protein Annotations
| MapMan:22.3.2.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:IPR024156 | UniProt:K4B1B8 | InterPro:P-loop_NTPase | PFAM:PF00025 |
| PRINTS:PR00328 | PFscan:PS51417 | PANTHER:PTHR11711 | PANTHER:PTHR11711:SF295 | SMART:SM00175 | SMART:SM00177 |
| SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF | InterPro:Small_GTPase_ARF/SAR | EnsemblPlantsGene:Solyc01g100870.2 |
| EnsemblPlants:Solyc01g100870.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI00027678B4 | : | : | : |
Description
No Description!
Coordinates
chr1:-:90769525..90773125
Molecular Weight (calculated)
24193.4 Da
IEP (calculated)
7.535
GRAVY (calculated)
-0.153
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWTCTFRAH VLPLEKGCMR GLTGSQTTLQ TRVEHEIHDF CSYIFVNIDF
201: KQCLEHLCTC
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWTCTFRAH VLPLEKGCMR GLTGSQTTLQ TRVEHEIHDF CSYIFVNIDF
201: KQCLEHLCTC
001: MGLSFGKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIASK A
Arabidopsis Description
ARF1ADP-ribosylation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P36397]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.